Experiment: LB, 37C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00240 and BPHYT_RS00245 overlap by 4 nucleotides BPHYT_RS00245 and BPHYT_RS00250 are separated by 170 nucleotides BPHYT_RS00250 and BPHYT_RS00255 are separated by 68 nucleotides
BPHYT_RS00240: BPHYT_RS00240 - amino acid ABC substrate-binding protein, at 62,769 to 63,911
_RS00240
BPHYT_RS00245: BPHYT_RS00245 - response regulator receiver, at 63,908 to 64,510
_RS00245
BPHYT_RS00250: BPHYT_RS00250 - hydratase, at 64,681 to 65,532
_RS00250
BPHYT_RS00255: BPHYT_RS00255 - amino acid ABC transporter, at 65,601 to 66,764
_RS00255
Position (kb) 64
65
66 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 63.764 kb on + strand, within BPHYT_RS00240 at 63.764 kb on + strand, within BPHYT_RS00240 at 63.855 kb on + strand at 63.944 kb on - strand at 63.957 kb on + strand at 63.957 kb on + strand at 63.957 kb on + strand at 64.192 kb on + strand, within BPHYT_RS00245 at 64.584 kb on - strand at 64.587 kb on - strand at 64.757 kb on + strand at 64.758 kb on - strand at 64.942 kb on + strand, within BPHYT_RS00250 at 64.985 kb on - strand, within BPHYT_RS00250 at 65.017 kb on + strand, within BPHYT_RS00250 at 65.099 kb on - strand, within BPHYT_RS00250 at 65.170 kb on + strand, within BPHYT_RS00250 at 65.170 kb on + strand, within BPHYT_RS00250 at 65.170 kb on + strand, within BPHYT_RS00250 at 65.171 kb on - strand, within BPHYT_RS00250 at 65.196 kb on - strand, within BPHYT_RS00250 at 65.217 kb on - strand, within BPHYT_RS00250 at 65.393 kb on + strand, within BPHYT_RS00250 at 65.394 kb on - strand, within BPHYT_RS00250 at 65.497 kb on - strand at 65.500 kb on + strand at 65.501 kb on - strand at 65.597 kb on + strand at 65.597 kb on + strand at 65.597 kb on + strand at 65.598 kb on - strand at 65.598 kb on - strand at 65.612 kb on - strand at 65.862 kb on + strand, within BPHYT_RS00255 at 65.863 kb on - strand, within BPHYT_RS00255 at 65.969 kb on + strand, within BPHYT_RS00255 at 65.970 kb on - strand, within BPHYT_RS00255 at 66.009 kb on + strand, within BPHYT_RS00255 at 66.009 kb on + strand, within BPHYT_RS00255 at 66.009 kb on + strand, within BPHYT_RS00255 at 66.010 kb on - strand, within BPHYT_RS00255 at 66.010 kb on - strand, within BPHYT_RS00255 at 66.010 kb on - strand at 66.010 kb on - strand, within BPHYT_RS00255 at 66.010 kb on - strand, within BPHYT_RS00255 at 66.015 kb on + strand, within BPHYT_RS00255 at 66.015 kb on + strand, within BPHYT_RS00255 at 66.015 kb on + strand at 66.015 kb on + strand, within BPHYT_RS00255 at 66.016 kb on - strand, within BPHYT_RS00255 at 66.016 kb on - strand, within BPHYT_RS00255 at 66.016 kb on - strand, within BPHYT_RS00255 at 66.016 kb on - strand, within BPHYT_RS00255 at 66.017 kb on + strand, within BPHYT_RS00255 at 66.017 kb on + strand, within BPHYT_RS00255 at 66.018 kb on - strand, within BPHYT_RS00255 at 66.064 kb on - strand, within BPHYT_RS00255 at 66.064 kb on - strand, within BPHYT_RS00255 at 66.153 kb on + strand, within BPHYT_RS00255 at 66.153 kb on + strand, within BPHYT_RS00255 at 66.193 kb on - strand, within BPHYT_RS00255 at 66.403 kb on - strand, within BPHYT_RS00255 at 66.420 kb on + strand, within BPHYT_RS00255 at 66.420 kb on + strand, within BPHYT_RS00255 at 66.421 kb on - strand, within BPHYT_RS00255 at 66.522 kb on + strand, within BPHYT_RS00255 at 66.522 kb on + strand, within BPHYT_RS00255
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 37C remove 63,764 + BPHYT_RS00240 0.87 -0.2 63,764 + BPHYT_RS00240 0.87 -1.4 63,855 + -0.7 63,944 - -0.7 63,957 + +0.1 63,957 + -1.0 63,957 + -1.5 64,192 + BPHYT_RS00245 0.47 -0.6 64,584 - -0.2 64,587 - -0.1 64,757 + -0.7 64,758 - -0.1 64,942 + BPHYT_RS00250 0.31 -1.6 64,985 - BPHYT_RS00250 0.36 +0.6 65,017 + BPHYT_RS00250 0.39 -0.5 65,099 - BPHYT_RS00250 0.49 -0.4 65,170 + BPHYT_RS00250 0.57 +0.6 65,170 + BPHYT_RS00250 0.57 +0.5 65,170 + BPHYT_RS00250 0.57 +1.9 65,171 - BPHYT_RS00250 0.58 -2.9 65,196 - BPHYT_RS00250 0.60 -1.0 65,217 - BPHYT_RS00250 0.63 -1.7 65,393 + BPHYT_RS00250 0.84 -2.5 65,394 - BPHYT_RS00250 0.84 +0.6 65,497 - -2.8 65,500 + +0.8 65,501 - -0.0 65,597 + -0.7 65,597 + +1.2 65,597 + -1.3 65,598 - +0.3 65,598 - +0.1 65,612 - +0.6 65,862 + BPHYT_RS00255 0.22 -0.1 65,863 - BPHYT_RS00255 0.23 +0.2 65,969 + BPHYT_RS00255 0.32 -0.0 65,970 - BPHYT_RS00255 0.32 +0.4 66,009 + BPHYT_RS00255 0.35 -1.3 66,009 + BPHYT_RS00255 0.35 +0.0 66,009 + BPHYT_RS00255 0.35 -1.2 66,010 - BPHYT_RS00255 0.35 +0.1 66,010 - BPHYT_RS00255 0.35 +0.3 66,010 - +1.9 66,010 - BPHYT_RS00255 0.35 +0.8 66,010 - BPHYT_RS00255 0.35 +0.1 66,015 + BPHYT_RS00255 0.36 +0.3 66,015 + BPHYT_RS00255 0.36 -0.0 66,015 + -0.3 66,015 + BPHYT_RS00255 0.36 +0.2 66,016 - BPHYT_RS00255 0.36 +0.1 66,016 - BPHYT_RS00255 0.36 +0.4 66,016 - BPHYT_RS00255 0.36 +2.3 66,016 - BPHYT_RS00255 0.36 +0.2 66,017 + BPHYT_RS00255 0.36 +0.5 66,017 + BPHYT_RS00255 0.36 -0.9 66,018 - BPHYT_RS00255 0.36 +0.1 66,064 - BPHYT_RS00255 0.40 -0.4 66,064 - BPHYT_RS00255 0.40 -0.6 66,153 + BPHYT_RS00255 0.47 +0.6 66,153 + BPHYT_RS00255 0.47 +0.5 66,193 - BPHYT_RS00255 0.51 +0.1 66,403 - BPHYT_RS00255 0.69 +0.9 66,420 + BPHYT_RS00255 0.70 +0.3 66,420 + BPHYT_RS00255 0.70 -0.5 66,421 - BPHYT_RS00255 0.70 -0.1 66,522 + BPHYT_RS00255 0.79 -1.1 66,522 + BPHYT_RS00255 0.79 +0.4
Or see this region's nucleotide sequence