Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS20725

Experiment: CDM1 without Glutamate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12655 and BBR_RS20725 are separated by 85 nucleotidesBBR_RS20725 and BBR_RS12660 are separated by 106 nucleotides BBR_RS12655: BBR_RS12655 - glycosyltransferase family 2 protein, at 595,069 to 596,040 _RS12655 BBR_RS20725: BBR_RS20725 - hypothetical protein, at 596,126 to 596,362 _RS20725 BBR_RS12660: BBR_RS12660 - EpsG family protein, at 596,469 to 597,527 _RS12660 Position (kb) 596 597Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 595.130 kb on + strandat 595.130 kb on + strandat 595.153 kb on + strandat 595.180 kb on + strand, within BBR_RS12655at 595.240 kb on - strand, within BBR_RS12655at 595.250 kb on - strand, within BBR_RS12655at 595.256 kb on - strand, within BBR_RS12655at 595.256 kb on - strand, within BBR_RS12655at 595.320 kb on + strand, within BBR_RS12655at 595.340 kb on + strand, within BBR_RS12655at 595.383 kb on + strand, within BBR_RS12655at 595.389 kb on - strand, within BBR_RS12655at 595.389 kb on - strand, within BBR_RS12655at 595.389 kb on - strand, within BBR_RS12655at 595.389 kb on - strand, within BBR_RS12655at 595.410 kb on - strand, within BBR_RS12655at 595.448 kb on + strand, within BBR_RS12655at 595.481 kb on - strand, within BBR_RS12655at 595.493 kb on + strand, within BBR_RS12655at 595.610 kb on + strand, within BBR_RS12655at 595.615 kb on + strand, within BBR_RS12655at 595.615 kb on + strand, within BBR_RS12655at 595.645 kb on - strand, within BBR_RS12655at 595.677 kb on + strand, within BBR_RS12655at 595.683 kb on + strand, within BBR_RS12655at 595.702 kb on - strand, within BBR_RS12655at 595.721 kb on + strand, within BBR_RS12655at 595.723 kb on + strand, within BBR_RS12655at 595.728 kb on + strand, within BBR_RS12655at 595.736 kb on - strand, within BBR_RS12655at 595.746 kb on + strand, within BBR_RS12655at 595.795 kb on - strand, within BBR_RS12655at 595.818 kb on - strand, within BBR_RS12655at 595.819 kb on + strand, within BBR_RS12655at 595.819 kb on + strand, within BBR_RS12655at 595.824 kb on + strand, within BBR_RS12655at 595.841 kb on + strand, within BBR_RS12655at 595.844 kb on + strand, within BBR_RS12655at 595.850 kb on + strand, within BBR_RS12655at 595.858 kb on - strand, within BBR_RS12655at 595.881 kb on + strand, within BBR_RS12655at 595.888 kb on + strand, within BBR_RS12655at 595.888 kb on + strand, within BBR_RS12655at 595.895 kb on + strand, within BBR_RS12655at 595.895 kb on + strand, within BBR_RS12655at 595.910 kb on - strand, within BBR_RS12655at 595.910 kb on - strand, within BBR_RS12655at 595.929 kb on - strand, within BBR_RS12655at 595.929 kb on - strand, within BBR_RS12655at 595.942 kb on - strand, within BBR_RS12655at 595.942 kb on - strand, within BBR_RS12655at 595.944 kb on + strandat 596.004 kb on - strandat 596.006 kb on + strandat 596.105 kb on - strandat 596.110 kb on + strandat 596.126 kb on - strandat 596.156 kb on + strand, within BBR_RS20725at 596.164 kb on + strand, within BBR_RS20725at 596.171 kb on - strand, within BBR_RS20725at 596.204 kb on + strand, within BBR_RS20725at 596.204 kb on - strand, within BBR_RS20725at 596.222 kb on - strand, within BBR_RS20725at 596.267 kb on - strand, within BBR_RS20725at 596.278 kb on + strand, within BBR_RS20725at 596.286 kb on - strand, within BBR_RS20725at 596.288 kb on + strand, within BBR_RS20725at 596.288 kb on + strand, within BBR_RS20725at 596.301 kb on - strand, within BBR_RS20725at 596.306 kb on + strand, within BBR_RS20725at 596.306 kb on - strand, within BBR_RS20725at 596.306 kb on - strand, within BBR_RS20725at 596.320 kb on - strand, within BBR_RS20725at 596.332 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.334 kb on + strand, within BBR_RS20725at 596.362 kb on - strandat 596.369 kb on + strandat 596.384 kb on + strandat 596.493 kb on - strandat 596.546 kb on + strandat 596.610 kb on + strand, within BBR_RS12660at 596.668 kb on - strand, within BBR_RS12660at 596.670 kb on + strand, within BBR_RS12660at 596.696 kb on + strand, within BBR_RS12660at 596.746 kb on - strand, within BBR_RS12660at 596.887 kb on - strand, within BBR_RS12660at 596.915 kb on - strand, within BBR_RS12660at 597.031 kb on + strand, within BBR_RS12660at 597.038 kb on + strand, within BBR_RS12660at 597.038 kb on + strand, within BBR_RS12660at 597.042 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.046 kb on - strand, within BBR_RS12660at 597.051 kb on - strand, within BBR_RS12660at 597.098 kb on - strand, within BBR_RS12660at 597.123 kb on - strand, within BBR_RS12660at 597.123 kb on - strand, within BBR_RS12660at 597.138 kb on + strand, within BBR_RS12660at 597.139 kb on + strand, within BBR_RS12660at 597.139 kb on + strand, within BBR_RS12660at 597.172 kb on + strand, within BBR_RS12660at 597.177 kb on + strand, within BBR_RS12660at 597.180 kb on - strand, within BBR_RS12660at 597.185 kb on - strand, within BBR_RS12660at 597.185 kb on - strand, within BBR_RS12660at 597.204 kb on + strand, within BBR_RS12660at 597.212 kb on + strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.256 kb on - strand, within BBR_RS12660at 597.329 kb on - strand, within BBR_RS12660at 597.339 kb on + strand, within BBR_RS12660at 597.340 kb on - strand, within BBR_RS12660at 597.342 kb on - strand, within BBR_RS12660at 597.348 kb on - strand, within BBR_RS12660at 597.348 kb on - strand, within BBR_RS12660

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Glutamate
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595,130 + -0.7
595,130 + +0.2
595,153 + -3.3
595,180 + BBR_RS12655 0.11 +0.7
595,240 - BBR_RS12655 0.18 -2.6
595,250 - BBR_RS12655 0.19 -2.4
595,256 - BBR_RS12655 0.19 +0.4
595,256 - BBR_RS12655 0.19 -1.7
595,320 + BBR_RS12655 0.26 +0.0
595,340 + BBR_RS12655 0.28 +0.4
595,383 + BBR_RS12655 0.32 +0.9
595,389 - BBR_RS12655 0.33 +0.6
595,389 - BBR_RS12655 0.33 -0.8
595,389 - BBR_RS12655 0.33 -2.2
595,389 - BBR_RS12655 0.33 -0.9
595,410 - BBR_RS12655 0.35 -0.9
595,448 + BBR_RS12655 0.39 -1.1
595,481 - BBR_RS12655 0.42 -0.6
595,493 + BBR_RS12655 0.44 +1.8
595,610 + BBR_RS12655 0.56 -2.8
595,615 + BBR_RS12655 0.56 -0.5
595,615 + BBR_RS12655 0.56 +0.3
595,645 - BBR_RS12655 0.59 -0.5
595,677 + BBR_RS12655 0.63 +1.0
595,683 + BBR_RS12655 0.63 +0.1
595,702 - BBR_RS12655 0.65 -1.2
595,721 + BBR_RS12655 0.67 +0.7
595,723 + BBR_RS12655 0.67 +0.8
595,728 + BBR_RS12655 0.68 -1.8
595,736 - BBR_RS12655 0.69 -0.1
595,746 + BBR_RS12655 0.70 +1.9
595,795 - BBR_RS12655 0.75 -1.7
595,818 - BBR_RS12655 0.77 -0.5
595,819 + BBR_RS12655 0.77 -0.1
595,819 + BBR_RS12655 0.77 -1.5
595,824 + BBR_RS12655 0.78 +0.9
595,841 + BBR_RS12655 0.79 -0.1
595,844 + BBR_RS12655 0.80 +0.9
595,850 + BBR_RS12655 0.80 -1.1
595,858 - BBR_RS12655 0.81 +0.5
595,881 + BBR_RS12655 0.84 -0.8
595,888 + BBR_RS12655 0.84 -1.6
595,888 + BBR_RS12655 0.84 -1.7
595,895 + BBR_RS12655 0.85 -1.8
595,895 + BBR_RS12655 0.85 +0.7
595,910 - BBR_RS12655 0.87 -0.4
595,910 - BBR_RS12655 0.87 +0.4
595,929 - BBR_RS12655 0.88 -1.1
595,929 - BBR_RS12655 0.88 -0.9
595,942 - BBR_RS12655 0.90 +0.4
595,942 - BBR_RS12655 0.90 -1.4
595,944 + -0.2
596,004 - -0.2
596,006 + -0.3
596,105 - -0.6
596,110 + -1.2
596,126 - -3.5
596,156 + BBR_RS20725 0.13 +1.3
596,164 + BBR_RS20725 0.16 -0.1
596,171 - BBR_RS20725 0.19 -0.3
596,204 + BBR_RS20725 0.33 -1.1
596,204 - BBR_RS20725 0.33 -1.4
596,222 - BBR_RS20725 0.41 -1.5
596,267 - BBR_RS20725 0.59 -1.2
596,278 + BBR_RS20725 0.64 -1.5
596,286 - BBR_RS20725 0.68 -2.1
596,288 + BBR_RS20725 0.68 -0.8
596,288 + BBR_RS20725 0.68 -1.2
596,301 - BBR_RS20725 0.74 -2.4
596,306 + BBR_RS20725 0.76 -0.4
596,306 - BBR_RS20725 0.76 -0.9
596,306 - BBR_RS20725 0.76 -0.6
596,320 - BBR_RS20725 0.82 -0.2
596,332 + BBR_RS20725 0.87 -0.3
596,334 + BBR_RS20725 0.88 -0.6
596,334 + BBR_RS20725 0.88 -0.5
596,334 + BBR_RS20725 0.88 -0.3
596,362 - +0.6
596,369 + -0.4
596,384 + +1.2
596,493 - -1.5
596,546 + -0.3
596,610 + BBR_RS12660 0.13 -1.4
596,668 - BBR_RS12660 0.19 -2.3
596,670 + BBR_RS12660 0.19 +0.5
596,696 + BBR_RS12660 0.21 -1.0
596,746 - BBR_RS12660 0.26 +0.2
596,887 - BBR_RS12660 0.39 -0.8
596,915 - BBR_RS12660 0.42 -2.0
597,031 + BBR_RS12660 0.53 -0.2
597,038 + BBR_RS12660 0.54 +0.7
597,038 + BBR_RS12660 0.54 -1.2
597,042 - BBR_RS12660 0.54 -2.2
597,046 - BBR_RS12660 0.54 -0.2
597,046 - BBR_RS12660 0.54 -2.0
597,046 - BBR_RS12660 0.54 -1.3
597,051 - BBR_RS12660 0.55 -2.9
597,098 - BBR_RS12660 0.59 -0.8
597,123 - BBR_RS12660 0.62 -1.4
597,123 - BBR_RS12660 0.62 +0.7
597,138 + BBR_RS12660 0.63 -1.7
597,139 + BBR_RS12660 0.63 -2.6
597,139 + BBR_RS12660 0.63 +0.2
597,172 + BBR_RS12660 0.66 +0.4
597,177 + BBR_RS12660 0.67 +1.0
597,180 - BBR_RS12660 0.67 -1.2
597,185 - BBR_RS12660 0.68 -0.9
597,185 - BBR_RS12660 0.68 -1.8
597,204 + BBR_RS12660 0.69 -0.0
597,212 + BBR_RS12660 0.70 -0.5
597,256 - BBR_RS12660 0.74 -1.1
597,256 - BBR_RS12660 0.74 +0.4
597,256 - BBR_RS12660 0.74 -0.7
597,329 - BBR_RS12660 0.81 +0.6
597,339 + BBR_RS12660 0.82 -1.1
597,340 - BBR_RS12660 0.82 -0.3
597,342 - BBR_RS12660 0.82 -1.4
597,348 - BBR_RS12660 0.83 +0.8
597,348 - BBR_RS12660 0.83 -3.0

Or see this region's nucleotide sequence