Experiment: CDM1 without Glutamate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BBR_RS12695 and BBR_RS12700 are separated by 151 nucleotides BBR_RS12700 and BBR_RS12705 are separated by 78 nucleotides BBR_RS12705 and BBR_RS12710 are separated by 8 nucleotides BBR_RS12710 and BBR_RS12715 are separated by 482 nucleotides
BBR_RS12695: BBR_RS12695 - IS21 family transposase, at 603,329 to 604,588
_RS12695
BBR_RS12700: BBR_RS12700 - hypothetical protein, at 604,740 to 605,282
_RS12700
BBR_RS12705: BBR_RS12705 - hypothetical protein, at 605,361 to 606,662
_RS12705
BBR_RS12710: BBR_RS12710 - hypothetical protein, at 606,671 to 606,916
_RS12710
BBR_RS12715: BBR_RS12715 - helix-turn-helix domain-containing protein, at 607,399 to 607,782
_RS12715
Position (kb) 605
606
607 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 604.384 kb on + strand, within BBR_RS12695 at 604.392 kb on - strand, within BBR_RS12695 at 604.394 kb on - strand, within BBR_RS12695 at 604.397 kb on + strand, within BBR_RS12695 at 604.400 kb on + strand, within BBR_RS12695 at 604.406 kb on + strand, within BBR_RS12695 at 604.407 kb on + strand, within BBR_RS12695 at 604.407 kb on + strand, within BBR_RS12695 at 604.455 kb on + strand, within BBR_RS12695 at 604.470 kb on + strand at 604.504 kb on + strand at 604.539 kb on + strand at 604.543 kb on + strand at 604.615 kb on - strand at 604.627 kb on + strand at 604.632 kb on - strand at 604.634 kb on + strand at 604.641 kb on - strand at 604.723 kb on + strand at 604.731 kb on - strand at 604.731 kb on - strand at 604.731 kb on - strand at 604.731 kb on - strand at 604.738 kb on - strand at 604.786 kb on - strand at 604.791 kb on + strand at 604.791 kb on + strand at 604.791 kb on - strand at 604.794 kb on - strand at 604.799 kb on - strand, within BBR_RS12700 at 604.799 kb on - strand, within BBR_RS12700 at 604.806 kb on + strand, within BBR_RS12700 at 604.814 kb on - strand, within BBR_RS12700 at 604.861 kb on - strand, within BBR_RS12700 at 604.866 kb on - strand, within BBR_RS12700 at 604.905 kb on - strand, within BBR_RS12700 at 604.918 kb on + strand, within BBR_RS12700 at 604.926 kb on - strand, within BBR_RS12700 at 604.926 kb on - strand, within BBR_RS12700 at 604.937 kb on + strand, within BBR_RS12700 at 604.937 kb on + strand, within BBR_RS12700 at 604.937 kb on + strand, within BBR_RS12700 at 604.937 kb on + strand, within BBR_RS12700 at 604.945 kb on - strand, within BBR_RS12700 at 604.945 kb on - strand, within BBR_RS12700 at 604.945 kb on - strand, within BBR_RS12700 at 604.945 kb on - strand, within BBR_RS12700 at 604.950 kb on - strand, within BBR_RS12700 at 604.964 kb on + strand, within BBR_RS12700 at 604.971 kb on - strand, within BBR_RS12700 at 604.972 kb on - strand, within BBR_RS12700 at 604.982 kb on - strand, within BBR_RS12700 at 604.982 kb on - strand, within BBR_RS12700 at 604.990 kb on - strand, within BBR_RS12700 at 604.990 kb on - strand, within BBR_RS12700 at 604.990 kb on - strand, within BBR_RS12700 at 605.016 kb on - strand, within BBR_RS12700 at 605.016 kb on - strand, within BBR_RS12700 at 605.038 kb on + strand, within BBR_RS12700 at 605.050 kb on + strand, within BBR_RS12700 at 605.050 kb on + strand, within BBR_RS12700 at 605.064 kb on + strand, within BBR_RS12700 at 605.067 kb on - strand, within BBR_RS12700 at 605.067 kb on - strand, within BBR_RS12700 at 605.067 kb on - strand, within BBR_RS12700 at 605.075 kb on - strand, within BBR_RS12700 at 605.080 kb on + strand, within BBR_RS12700 at 605.087 kb on + strand, within BBR_RS12700 at 605.087 kb on + strand, within BBR_RS12700 at 605.087 kb on + strand, within BBR_RS12700 at 605.088 kb on - strand, within BBR_RS12700 at 605.095 kb on + strand, within BBR_RS12700 at 605.095 kb on - strand, within BBR_RS12700 at 605.095 kb on - strand, within BBR_RS12700 at 605.095 kb on - strand, within BBR_RS12700 at 605.095 kb on - strand, within BBR_RS12700 at 605.103 kb on - strand, within BBR_RS12700 at 605.207 kb on - strand, within BBR_RS12700 at 605.229 kb on + strand at 605.386 kb on + strand at 605.419 kb on + strand at 605.422 kb on - strand at 605.434 kb on - strand at 605.471 kb on - strand at 605.544 kb on + strand, within BBR_RS12705 at 605.555 kb on + strand, within BBR_RS12705 at 605.606 kb on + strand, within BBR_RS12705 at 605.613 kb on - strand, within BBR_RS12705 at 605.670 kb on - strand, within BBR_RS12705 at 605.685 kb on + strand, within BBR_RS12705 at 605.704 kb on + strand, within BBR_RS12705 at 605.734 kb on - strand, within BBR_RS12705 at 605.736 kb on + strand, within BBR_RS12705 at 605.754 kb on - strand, within BBR_RS12705 at 605.764 kb on - strand, within BBR_RS12705 at 605.807 kb on - strand, within BBR_RS12705 at 605.823 kb on - strand, within BBR_RS12705 at 605.844 kb on - strand, within BBR_RS12705 at 605.875 kb on - strand, within BBR_RS12705 at 605.926 kb on - strand, within BBR_RS12705 at 605.935 kb on - strand, within BBR_RS12705 at 605.962 kb on + strand, within BBR_RS12705 at 605.962 kb on + strand, within BBR_RS12705 at 605.964 kb on + strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.970 kb on - strand, within BBR_RS12705 at 605.972 kb on - strand, within BBR_RS12705 at 605.989 kb on - strand, within BBR_RS12705 at 606.024 kb on - strand, within BBR_RS12705 at 606.095 kb on - strand, within BBR_RS12705 at 606.101 kb on - strand, within BBR_RS12705 at 606.122 kb on + strand, within BBR_RS12705 at 606.186 kb on + strand, within BBR_RS12705 at 606.201 kb on + strand, within BBR_RS12705 at 606.206 kb on + strand, within BBR_RS12705 at 606.206 kb on + strand, within BBR_RS12705 at 606.208 kb on + strand, within BBR_RS12705 at 606.208 kb on + strand, within BBR_RS12705 at 606.212 kb on - strand, within BBR_RS12705 at 606.214 kb on - strand, within BBR_RS12705 at 606.216 kb on - strand, within BBR_RS12705 at 606.255 kb on + strand, within BBR_RS12705 at 606.299 kb on - strand, within BBR_RS12705 at 606.310 kb on - strand, within BBR_RS12705 at 606.311 kb on - strand, within BBR_RS12705 at 606.320 kb on - strand, within BBR_RS12705 at 606.357 kb on - strand, within BBR_RS12705 at 606.357 kb on - strand, within BBR_RS12705 at 606.360 kb on - strand, within BBR_RS12705 at 606.388 kb on + strand, within BBR_RS12705 at 606.393 kb on + strand, within BBR_RS12705 at 606.396 kb on - strand, within BBR_RS12705 at 606.408 kb on + strand, within BBR_RS12705 at 606.413 kb on - strand, within BBR_RS12705 at 606.422 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.439 kb on + strand, within BBR_RS12705 at 606.447 kb on - strand, within BBR_RS12705 at 606.447 kb on - strand, within BBR_RS12705 at 606.447 kb on - strand, within BBR_RS12705 at 606.447 kb on - strand, within BBR_RS12705 at 606.486 kb on + strand, within BBR_RS12705 at 606.486 kb on + strand, within BBR_RS12705 at 606.486 kb on + strand, within BBR_RS12705 at 606.486 kb on + strand, within BBR_RS12705 at 606.486 kb on + strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.494 kb on - strand, within BBR_RS12705 at 606.505 kb on + strand, within BBR_RS12705 at 606.597 kb on + strand at 606.597 kb on + strand at 606.602 kb on + strand at 606.668 kb on + strand at 606.668 kb on + strand at 606.784 kb on + strand, within BBR_RS12710 at 606.790 kb on + strand, within BBR_RS12710 at 606.790 kb on + strand, within BBR_RS12710 at 606.794 kb on - strand, within BBR_RS12710 at 606.799 kb on - strand, within BBR_RS12710 at 606.800 kb on + strand, within BBR_RS12710 at 606.808 kb on - strand, within BBR_RS12710 at 606.866 kb on + strand, within BBR_RS12710 at 606.874 kb on - strand, within BBR_RS12710 at 606.889 kb on + strand, within BBR_RS12710 at 606.902 kb on - strand at 606.902 kb on - strand at 606.923 kb on + strand at 606.963 kb on + strand at 606.971 kb on - strand at 606.972 kb on - strand at 607.017 kb on + strand at 607.025 kb on - strand at 607.084 kb on - strand at 607.085 kb on + strand at 607.108 kb on - strand at 607.117 kb on - strand at 607.123 kb on + strand at 607.123 kb on + strand at 607.123 kb on + strand at 607.123 kb on + strand at 607.131 kb on - strand at 607.145 kb on + strand at 607.147 kb on + strand at 607.179 kb on + strand at 607.211 kb on - strand at 607.216 kb on + strand at 607.224 kb on - strand at 607.229 kb on - strand at 607.256 kb on + strand at 607.256 kb on + strand at 607.305 kb on - strand at 607.310 kb on + strand at 607.401 kb on + strand at 607.401 kb on + strand at 607.409 kb on - strand at 607.432 kb on - strand at 607.437 kb on - strand at 607.437 kb on - strand at 607.442 kb on - strand, within BBR_RS12715 at 607.456 kb on - strand, within BBR_RS12715 at 607.468 kb on - strand, within BBR_RS12715 at 607.518 kb on + strand, within BBR_RS12715 at 607.540 kb on + strand, within BBR_RS12715 at 607.543 kb on + strand, within BBR_RS12715 at 607.577 kb on + strand, within BBR_RS12715 at 607.577 kb on + strand, within BBR_RS12715 at 607.597 kb on + strand, within BBR_RS12715 at 607.600 kb on - strand, within BBR_RS12715 at 607.600 kb on - strand, within BBR_RS12715 at 607.640 kb on + strand, within BBR_RS12715 at 607.653 kb on - strand, within BBR_RS12715
Per-strain Table
Position Strand Gene LocusTag Fraction CDM1 without Glutamate remove 604,384 + BBR_RS12695 0.84 -0.6 604,392 - BBR_RS12695 0.84 +2.4 604,394 - BBR_RS12695 0.85 -0.3 604,397 + BBR_RS12695 0.85 -0.0 604,400 + BBR_RS12695 0.85 -1.2 604,406 + BBR_RS12695 0.85 -1.2 604,407 + BBR_RS12695 0.86 -0.6 604,407 + BBR_RS12695 0.86 -0.2 604,455 + BBR_RS12695 0.89 +0.7 604,470 + -0.5 604,504 + +0.6 604,539 + -0.4 604,543 + -0.0 604,615 - +0.9 604,627 + +0.8 604,632 - +0.2 604,634 + +0.4 604,641 - -0.2 604,723 + -0.2 604,731 - -0.4 604,731 - -0.4 604,731 - -0.3 604,731 - -1.3 604,738 - +0.1 604,786 - -1.3 604,791 + -0.2 604,791 + -1.9 604,791 - +0.6 604,794 - -0.2 604,799 - BBR_RS12700 0.11 -0.6 604,799 - BBR_RS12700 0.11 -2.9 604,806 + BBR_RS12700 0.12 +0.4 604,814 - BBR_RS12700 0.14 -2.3 604,861 - BBR_RS12700 0.22 -3.4 604,866 - BBR_RS12700 0.23 -0.1 604,905 - BBR_RS12700 0.30 -1.4 604,918 + BBR_RS12700 0.33 -0.7 604,926 - BBR_RS12700 0.34 +0.8 604,926 - BBR_RS12700 0.34 -0.5 604,937 + BBR_RS12700 0.36 -0.6 604,937 + BBR_RS12700 0.36 -0.7 604,937 + BBR_RS12700 0.36 -0.5 604,937 + BBR_RS12700 0.36 -2.9 604,945 - BBR_RS12700 0.38 -0.2 604,945 - BBR_RS12700 0.38 -3.7 604,945 - BBR_RS12700 0.38 +0.8 604,945 - BBR_RS12700 0.38 +0.8 604,950 - BBR_RS12700 0.39 -0.8 604,964 + BBR_RS12700 0.41 +0.4 604,971 - BBR_RS12700 0.43 -0.4 604,972 - BBR_RS12700 0.43 -1.7 604,982 - BBR_RS12700 0.45 -0.1 604,982 - BBR_RS12700 0.45 -0.7 604,990 - BBR_RS12700 0.46 -2.0 604,990 - BBR_RS12700 0.46 -0.4 604,990 - BBR_RS12700 0.46 -0.4 605,016 - BBR_RS12700 0.51 +1.3 605,016 - BBR_RS12700 0.51 -1.9 605,038 + BBR_RS12700 0.55 -2.1 605,050 + BBR_RS12700 0.57 -2.0 605,050 + BBR_RS12700 0.57 -1.3 605,064 + BBR_RS12700 0.60 -1.3 605,067 - BBR_RS12700 0.60 -0.1 605,067 - BBR_RS12700 0.60 -0.1 605,067 - BBR_RS12700 0.60 -0.9 605,075 - BBR_RS12700 0.62 -0.9 605,080 + BBR_RS12700 0.63 -1.2 605,087 + BBR_RS12700 0.64 +0.6 605,087 + BBR_RS12700 0.64 +1.5 605,087 + BBR_RS12700 0.64 -2.8 605,088 - BBR_RS12700 0.64 -1.8 605,095 + BBR_RS12700 0.65 -1.0 605,095 - BBR_RS12700 0.65 +0.5 605,095 - BBR_RS12700 0.65 -1.4 605,095 - BBR_RS12700 0.65 -1.3 605,095 - BBR_RS12700 0.65 +0.1 605,103 - BBR_RS12700 0.67 -0.3 605,207 - BBR_RS12700 0.86 -1.0 605,229 + +0.0 605,386 + -0.7 605,419 + -1.5 605,422 - -2.2 605,434 - -1.7 605,471 - -0.7 605,544 + BBR_RS12705 0.14 +0.2 605,555 + BBR_RS12705 0.15 -2.0 605,606 + BBR_RS12705 0.19 -0.6 605,613 - BBR_RS12705 0.19 -1.5 605,670 - BBR_RS12705 0.24 -2.9 605,685 + BBR_RS12705 0.25 -2.4 605,704 + BBR_RS12705 0.26 +0.2 605,734 - BBR_RS12705 0.29 +1.2 605,736 + BBR_RS12705 0.29 -0.8 605,754 - BBR_RS12705 0.30 -0.7 605,764 - BBR_RS12705 0.31 -1.9 605,807 - BBR_RS12705 0.34 -0.7 605,823 - BBR_RS12705 0.35 -0.6 605,844 - BBR_RS12705 0.37 +1.3 605,875 - BBR_RS12705 0.39 -1.5 605,926 - BBR_RS12705 0.43 -1.2 605,935 - BBR_RS12705 0.44 -1.5 605,962 + BBR_RS12705 0.46 -0.6 605,962 + BBR_RS12705 0.46 +0.2 605,964 + BBR_RS12705 0.46 -2.0 605,970 - BBR_RS12705 0.47 -0.8 605,970 - BBR_RS12705 0.47 +1.3 605,970 - BBR_RS12705 0.47 -0.7 605,970 - BBR_RS12705 0.47 +0.3 605,970 - BBR_RS12705 0.47 +0.2 605,970 - BBR_RS12705 0.47 -1.5 605,972 - BBR_RS12705 0.47 -2.3 605,989 - BBR_RS12705 0.48 -1.0 606,024 - BBR_RS12705 0.51 -1.4 606,095 - BBR_RS12705 0.56 +0.8 606,101 - BBR_RS12705 0.57 -0.2 606,122 + BBR_RS12705 0.58 -2.0 606,186 + BBR_RS12705 0.63 -2.6 606,201 + BBR_RS12705 0.65 +0.9 606,206 + BBR_RS12705 0.65 -0.5 606,206 + BBR_RS12705 0.65 -1.6 606,208 + BBR_RS12705 0.65 +0.5 606,208 + BBR_RS12705 0.65 -0.1 606,212 - BBR_RS12705 0.65 -0.2 606,214 - BBR_RS12705 0.66 -2.0 606,216 - BBR_RS12705 0.66 -0.6 606,255 + BBR_RS12705 0.69 +0.9 606,299 - BBR_RS12705 0.72 -0.2 606,310 - BBR_RS12705 0.73 +0.5 606,311 - BBR_RS12705 0.73 -1.4 606,320 - BBR_RS12705 0.74 -1.7 606,357 - BBR_RS12705 0.76 -1.0 606,357 - BBR_RS12705 0.76 +0.4 606,360 - BBR_RS12705 0.77 -1.6 606,388 + BBR_RS12705 0.79 -0.2 606,393 + BBR_RS12705 0.79 -0.4 606,396 - BBR_RS12705 0.79 -0.4 606,408 + BBR_RS12705 0.80 -0.8 606,413 - BBR_RS12705 0.81 -0.1 606,422 + BBR_RS12705 0.81 -1.5 606,439 + BBR_RS12705 0.83 -0.7 606,439 + BBR_RS12705 0.83 +0.5 606,439 + BBR_RS12705 0.83 -0.8 606,439 + BBR_RS12705 0.83 -2.1 606,439 + BBR_RS12705 0.83 -0.1 606,439 + BBR_RS12705 0.83 +0.1 606,439 + BBR_RS12705 0.83 -0.9 606,447 - BBR_RS12705 0.83 +0.8 606,447 - BBR_RS12705 0.83 +0.0 606,447 - BBR_RS12705 0.83 +1.1 606,447 - BBR_RS12705 0.83 -1.1 606,486 + BBR_RS12705 0.86 -3.0 606,486 + BBR_RS12705 0.86 -2.3 606,486 + BBR_RS12705 0.86 +1.0 606,486 + BBR_RS12705 0.86 -1.3 606,486 + BBR_RS12705 0.86 -0.8 606,494 - BBR_RS12705 0.87 +0.5 606,494 - BBR_RS12705 0.87 -0.6 606,494 - BBR_RS12705 0.87 +1.2 606,494 - BBR_RS12705 0.87 -1.3 606,494 - BBR_RS12705 0.87 -2.3 606,494 - BBR_RS12705 0.87 -1.6 606,494 - BBR_RS12705 0.87 -0.9 606,494 - BBR_RS12705 0.87 -1.0 606,494 - BBR_RS12705 0.87 +0.3 606,505 + BBR_RS12705 0.88 -1.5 606,597 + +0.0 606,597 + -0.5 606,602 + -0.8 606,668 + -0.9 606,668 + -0.3 606,784 + BBR_RS12710 0.46 +0.0 606,790 + BBR_RS12710 0.48 -0.5 606,790 + BBR_RS12710 0.48 +0.2 606,794 - BBR_RS12710 0.50 +0.8 606,799 - BBR_RS12710 0.52 -0.7 606,800 + BBR_RS12710 0.52 +0.4 606,808 - BBR_RS12710 0.56 -1.6 606,866 + BBR_RS12710 0.79 -1.1 606,874 - BBR_RS12710 0.83 -0.6 606,889 + BBR_RS12710 0.89 -0.2 606,902 - -1.8 606,902 - +0.3 606,923 + -0.2 606,963 + -0.1 606,971 - -0.6 606,972 - -0.3 607,017 + +0.3 607,025 - -0.6 607,084 - -0.3 607,085 + +0.4 607,108 - -0.8 607,117 - -1.2 607,123 + +0.1 607,123 + -1.0 607,123 + -0.4 607,123 + -0.8 607,131 - -0.1 607,145 + +2.2 607,147 + +0.2 607,179 + -0.6 607,211 - +0.5 607,216 + +0.9 607,224 - -0.9 607,229 - -0.5 607,256 + -0.1 607,256 + -0.6 607,305 - -0.3 607,310 + +0.6 607,401 + -0.3 607,401 + -0.8 607,409 - +0.4 607,432 - -0.0 607,437 - -2.2 607,437 - -3.0 607,442 - BBR_RS12715 0.11 -0.7 607,456 - BBR_RS12715 0.15 +0.3 607,468 - BBR_RS12715 0.18 -0.2 607,518 + BBR_RS12715 0.31 +0.5 607,540 + BBR_RS12715 0.37 -1.8 607,543 + BBR_RS12715 0.38 +0.2 607,577 + BBR_RS12715 0.46 -1.2 607,577 + BBR_RS12715 0.46 +0.6 607,597 + BBR_RS12715 0.52 -1.0 607,600 - BBR_RS12715 0.52 +0.3 607,600 - BBR_RS12715 0.52 +0.9 607,640 + BBR_RS12715 0.63 +0.3 607,653 - BBR_RS12715 0.66 -0.2
Or see this region's nucleotide sequence