Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS12375

Experiment: CDM1 without Glutamate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS12365 and BBR_RS12370 are separated by 115 nucleotidesBBR_RS12370 and BBR_RS12375 are separated by 5 nucleotidesBBR_RS12375 and BBR_RS12380 are separated by 104 nucleotidesBBR_RS12380 and BBR_RS12385 are separated by 195 nucleotides BBR_RS12365: BBR_RS12365 - DUF177 domain-containing protein, at 525,358 to 525,978 _RS12365 BBR_RS12370: BBR_RS12370 - cell division protein, at 526,094 to 526,879 _RS12370 BBR_RS12375: BBR_RS12375 - pantetheine-phosphate adenylyltransferase, at 526,885 to 527,385 _RS12375 BBR_RS12380: BBR_RS12380 - DUF3039 domain-containing protein, at 527,490 to 527,771 _RS12380 BBR_RS12385: BBR_RS12385 - oxidoreductase, at 527,967 to 528,977 _RS12385 Position (kb) 526 527 528Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 525.890 kb on - strand, within BBR_RS12365at 525.896 kb on + strand, within BBR_RS12365at 525.905 kb on + strand, within BBR_RS12365at 525.939 kb on - strandat 526.027 kb on - strandat 526.034 kb on + strandat 526.065 kb on + strandat 526.070 kb on + strandat 526.073 kb on - strandat 526.073 kb on - strandat 526.078 kb on - strandat 526.078 kb on - strandat 526.082 kb on + strandat 526.082 kb on + strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.090 kb on - strandat 526.110 kb on - strandat 526.131 kb on + strandat 526.733 kb on - strand, within BBR_RS12370at 526.891 kb on - strandat 526.896 kb on - strandat 526.898 kb on + strandat 526.916 kb on + strandat 527.083 kb on - strand, within BBR_RS12375at 527.125 kb on - strand, within BBR_RS12375at 527.212 kb on - strand, within BBR_RS12375at 527.388 kb on + strandat 527.388 kb on - strandat 527.420 kb on - strandat 527.420 kb on - strandat 527.420 kb on - strandat 527.422 kb on + strandat 527.422 kb on + strandat 527.422 kb on + strandat 527.430 kb on - strandat 527.506 kb on + strandat 527.514 kb on + strandat 527.540 kb on + strand, within BBR_RS12380at 527.558 kb on - strand, within BBR_RS12380at 527.561 kb on + strand, within BBR_RS12380at 527.574 kb on - strand, within BBR_RS12380at 527.629 kb on - strand, within BBR_RS12380at 527.636 kb on + strand, within BBR_RS12380at 527.666 kb on + strand, within BBR_RS12380at 527.671 kb on + strand, within BBR_RS12380at 527.685 kb on + strand, within BBR_RS12380at 527.698 kb on - strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.704 kb on + strand, within BBR_RS12380at 527.712 kb on + strand, within BBR_RS12380at 527.712 kb on - strand, within BBR_RS12380at 527.734 kb on - strand, within BBR_RS12380at 527.835 kb on - strandat 527.886 kb on - strandat 527.897 kb on + strandat 527.913 kb on + strandat 527.915 kb on + strandat 527.916 kb on - strandat 528.000 kb on - strandat 528.022 kb on - strandat 528.039 kb on - strandat 528.067 kb on + strandat 528.082 kb on + strand, within BBR_RS12385at 528.082 kb on + strand, within BBR_RS12385at 528.090 kb on - strand, within BBR_RS12385at 528.090 kb on - strand, within BBR_RS12385at 528.104 kb on - strand, within BBR_RS12385at 528.107 kb on - strand, within BBR_RS12385at 528.114 kb on - strand, within BBR_RS12385at 528.139 kb on - strand, within BBR_RS12385at 528.140 kb on - strand, within BBR_RS12385at 528.142 kb on + strand, within BBR_RS12385at 528.150 kb on - strand, within BBR_RS12385at 528.173 kb on - strand, within BBR_RS12385at 528.180 kb on - strand, within BBR_RS12385at 528.180 kb on - strand, within BBR_RS12385at 528.252 kb on + strand, within BBR_RS12385at 528.280 kb on + strand, within BBR_RS12385at 528.310 kb on + strand, within BBR_RS12385at 528.320 kb on + strand, within BBR_RS12385at 528.328 kb on - strand, within BBR_RS12385at 528.328 kb on - strand, within BBR_RS12385at 528.331 kb on + strand, within BBR_RS12385at 528.343 kb on - strand, within BBR_RS12385at 528.348 kb on + strand, within BBR_RS12385at 528.363 kb on + strand, within BBR_RS12385at 528.372 kb on + strand, within BBR_RS12385at 528.381 kb on + strand, within BBR_RS12385

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Glutamate
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525,890 - BBR_RS12365 0.86 +0.5
525,896 + BBR_RS12365 0.87 -1.9
525,905 + BBR_RS12365 0.88 -0.6
525,939 - +0.6
526,027 - +1.7
526,034 + -0.1
526,065 + -0.4
526,070 + -0.5
526,073 - +0.2
526,073 - +1.1
526,078 - -1.0
526,078 - +1.1
526,082 + -0.4
526,082 + +1.2
526,090 - +0.4
526,090 - +0.6
526,090 - +0.5
526,110 - +0.0
526,131 + -0.3
526,733 - BBR_RS12370 0.81 +0.3
526,891 - +0.9
526,896 - -1.0
526,898 + +0.6
526,916 + +0.3
527,083 - BBR_RS12375 0.40 -1.5
527,125 - BBR_RS12375 0.48 +0.2
527,212 - BBR_RS12375 0.65 +1.3
527,388 + -1.3
527,388 - -1.5
527,420 - -0.3
527,420 - -0.3
527,420 - -2.2
527,422 + -1.5
527,422 + -0.4
527,422 + -1.4
527,430 - -0.4
527,506 + -3.1
527,514 + -2.5
527,540 + BBR_RS12380 0.18 -0.5
527,558 - BBR_RS12380 0.24 +0.2
527,561 + BBR_RS12380 0.25 -0.5
527,574 - BBR_RS12380 0.30 -1.1
527,629 - BBR_RS12380 0.49 +0.1
527,636 + BBR_RS12380 0.52 -0.3
527,666 + BBR_RS12380 0.62 +2.0
527,671 + BBR_RS12380 0.64 -3.4
527,685 + BBR_RS12380 0.69 -0.7
527,698 - BBR_RS12380 0.74 -0.5
527,704 + BBR_RS12380 0.76 -0.2
527,704 + BBR_RS12380 0.76 -0.3
527,704 + BBR_RS12380 0.76 -2.7
527,712 + BBR_RS12380 0.79 -0.6
527,712 - BBR_RS12380 0.79 -1.7
527,734 - BBR_RS12380 0.87 -1.3
527,835 - +0.5
527,886 - -0.4
527,897 + +0.3
527,913 + +2.0
527,915 + +0.6
527,916 - -0.1
528,000 - +1.4
528,022 - +1.1
528,039 - +0.1
528,067 + -1.1
528,082 + BBR_RS12385 0.11 -1.1
528,082 + BBR_RS12385 0.11 +1.4
528,090 - BBR_RS12385 0.12 -0.6
528,090 - BBR_RS12385 0.12 +0.4
528,104 - BBR_RS12385 0.14 -0.1
528,107 - BBR_RS12385 0.14 -0.0
528,114 - BBR_RS12385 0.15 +0.4
528,139 - BBR_RS12385 0.17 +0.3
528,140 - BBR_RS12385 0.17 +0.2
528,142 + BBR_RS12385 0.17 +0.9
528,150 - BBR_RS12385 0.18 -0.3
528,173 - BBR_RS12385 0.20 +0.6
528,180 - BBR_RS12385 0.21 +1.5
528,180 - BBR_RS12385 0.21 +2.4
528,252 + BBR_RS12385 0.28 -0.5
528,280 + BBR_RS12385 0.31 -0.2
528,310 + BBR_RS12385 0.34 +0.3
528,320 + BBR_RS12385 0.35 +0.5
528,328 - BBR_RS12385 0.36 +1.5
528,328 - BBR_RS12385 0.36 -0.2
528,331 + BBR_RS12385 0.36 -0.3
528,343 - BBR_RS12385 0.37 +0.0
528,348 + BBR_RS12385 0.38 -0.9
528,363 + BBR_RS12385 0.39 -0.8
528,372 + BBR_RS12385 0.40 +0.3
528,381 + BBR_RS12385 0.41 +0.7

Or see this region's nucleotide sequence