Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18330

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18325 and AO356_18330 are separated by 100 nucleotidesAO356_18330 and AO356_18335 are separated by 468 nucleotides AO356_18325: AO356_18325 - argininosuccinate synthase, at 4,128,385 to 4,129,602 _18325 AO356_18330: AO356_18330 - hypothetical protein, at 4,129,703 to 4,130,188 _18330 AO356_18335: AO356_18335 - LuxR family transcriptional regulator, at 4,130,657 to 4,131,283 _18335 Position (kb) 4129 4130 4131Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4128.784 kb on + strand, within AO356_18325at 4128.785 kb on - strand, within AO356_18325at 4128.785 kb on - strand, within AO356_18325at 4128.863 kb on - strand, within AO356_18325at 4128.949 kb on + strand, within AO356_18325at 4128.949 kb on + strand, within AO356_18325at 4128.949 kb on + strand, within AO356_18325at 4128.949 kb on + strand, within AO356_18325at 4129.045 kb on + strand, within AO356_18325at 4129.046 kb on - strand, within AO356_18325at 4129.060 kb on + strand, within AO356_18325at 4129.183 kb on + strand, within AO356_18325at 4129.183 kb on + strand, within AO356_18325at 4129.183 kb on + strand, within AO356_18325at 4129.184 kb on - strand, within AO356_18325at 4129.211 kb on - strand, within AO356_18325at 4129.211 kb on - strand, within AO356_18325at 4129.316 kb on - strand, within AO356_18325at 4129.316 kb on - strand, within AO356_18325at 4129.316 kb on - strand, within AO356_18325at 4129.330 kb on + strand, within AO356_18325at 4129.331 kb on - strand, within AO356_18325at 4129.331 kb on - strand, within AO356_18325at 4129.412 kb on + strand, within AO356_18325at 4129.413 kb on - strand, within AO356_18325at 4129.413 kb on - strand, within AO356_18325at 4129.426 kb on + strand, within AO356_18325at 4129.426 kb on + strand, within AO356_18325at 4129.426 kb on + strand, within AO356_18325at 4129.427 kb on - strand, within AO356_18325at 4129.427 kb on - strand, within AO356_18325at 4129.427 kb on - strand, within AO356_18325at 4129.455 kb on + strand, within AO356_18325at 4129.456 kb on - strand, within AO356_18325at 4129.456 kb on - strand, within AO356_18325at 4129.456 kb on - strand, within AO356_18325at 4129.516 kb on + strandat 4129.516 kb on + strandat 4129.517 kb on - strandat 4129.517 kb on - strandat 4129.612 kb on + strandat 4129.613 kb on - strandat 4129.614 kb on + strandat 4129.674 kb on + strandat 4129.674 kb on + strandat 4129.674 kb on + strandat 4129.674 kb on + strandat 4129.674 kb on + strandat 4129.674 kb on + strandat 4129.675 kb on - strandat 4129.675 kb on - strandat 4129.675 kb on - strandat 4129.743 kb on + strandat 4129.743 kb on + strandat 4129.743 kb on + strandat 4129.744 kb on - strandat 4129.744 kb on - strandat 4129.752 kb on + strand, within AO356_18330at 4129.753 kb on - strand, within AO356_18330at 4129.753 kb on - strand, within AO356_18330at 4129.753 kb on - strand, within AO356_18330at 4129.871 kb on + strand, within AO356_18330at 4129.871 kb on + strand, within AO356_18330at 4129.871 kb on + strand, within AO356_18330at 4129.872 kb on - strand, within AO356_18330at 4129.872 kb on - strand, within AO356_18330at 4129.872 kb on - strand, within AO356_18330at 4129.907 kb on + strand, within AO356_18330at 4129.907 kb on + strand, within AO356_18330at 4129.907 kb on + strand, within AO356_18330at 4129.907 kb on + strand, within AO356_18330at 4129.950 kb on - strand, within AO356_18330at 4129.987 kb on - strand, within AO356_18330at 4129.987 kb on - strand, within AO356_18330at 4129.987 kb on - strand, within AO356_18330at 4130.034 kb on - strand, within AO356_18330at 4130.037 kb on + strand, within AO356_18330at 4130.037 kb on + strand, within AO356_18330at 4130.037 kb on + strand, within AO356_18330at 4130.067 kb on + strand, within AO356_18330at 4130.068 kb on - strand, within AO356_18330at 4130.239 kb on + strandat 4130.289 kb on + strandat 4130.380 kb on + strandat 4130.387 kb on - strandat 4130.420 kb on + strandat 4130.421 kb on - strandat 4130.442 kb on - strandat 4130.442 kb on - strandat 4130.442 kb on - strandat 4130.442 kb on - strandat 4130.487 kb on + strandat 4130.524 kb on + strandat 4130.525 kb on - strandat 4130.525 kb on - strandat 4130.525 kb on - strandat 4130.539 kb on + strandat 4130.539 kb on + strandat 4130.539 kb on + strandat 4130.540 kb on - strandat 4130.546 kb on + strandat 4130.546 kb on + strandat 4130.546 kb on + strandat 4130.546 kb on + strandat 4130.547 kb on - strandat 4130.596 kb on + strandat 4130.607 kb on - strandat 4130.612 kb on - strandat 4130.612 kb on - strandat 4130.662 kb on + strandat 4130.662 kb on + strandat 4130.663 kb on - strandat 4130.706 kb on + strandat 4130.732 kb on + strand, within AO356_18335at 4130.772 kb on + strand, within AO356_18335at 4130.773 kb on - strand, within AO356_18335at 4130.886 kb on + strand, within AO356_18335at 4130.886 kb on + strand, within AO356_18335at 4130.954 kb on + strand, within AO356_18335at 4130.954 kb on + strand, within AO356_18335at 4130.955 kb on - strand, within AO356_18335at 4130.985 kb on + strand, within AO356_18335at 4130.985 kb on + strand, within AO356_18335at 4130.986 kb on - strand, within AO356_18335at 4130.988 kb on + strand, within AO356_18335at 4130.988 kb on + strand, within AO356_18335at 4130.989 kb on - strand, within AO356_18335at 4131.023 kb on + strand, within AO356_18335at 4131.023 kb on + strand, within AO356_18335at 4131.023 kb on + strand, within AO356_18335at 4131.047 kb on - strand, within AO356_18335

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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4,128,784 + AO356_18325 0.33 -3.2
4,128,785 - AO356_18325 0.33 -2.7
4,128,785 - AO356_18325 0.33 -1.7
4,128,863 - AO356_18325 0.39 -2.7
4,128,949 + AO356_18325 0.46 -2.1
4,128,949 + AO356_18325 0.46 -2.4
4,128,949 + AO356_18325 0.46 -0.8
4,128,949 + AO356_18325 0.46 -3.5
4,129,045 + AO356_18325 0.54 -2.3
4,129,046 - AO356_18325 0.54 -2.8
4,129,060 + AO356_18325 0.55 -2.2
4,129,183 + AO356_18325 0.66 -3.0
4,129,183 + AO356_18325 0.66 -1.8
4,129,183 + AO356_18325 0.66 -2.9
4,129,184 - AO356_18325 0.66 -2.8
4,129,211 - AO356_18325 0.68 -0.7
4,129,211 - AO356_18325 0.68 -3.6
4,129,316 - AO356_18325 0.76 -4.0
4,129,316 - AO356_18325 0.76 +0.2
4,129,316 - AO356_18325 0.76 -3.9
4,129,330 + AO356_18325 0.78 -3.2
4,129,331 - AO356_18325 0.78 -1.6
4,129,331 - AO356_18325 0.78 -2.0
4,129,412 + AO356_18325 0.84 -2.3
4,129,413 - AO356_18325 0.84 -2.7
4,129,413 - AO356_18325 0.84 -2.6
4,129,426 + AO356_18325 0.85 -1.5
4,129,426 + AO356_18325 0.85 -1.0
4,129,426 + AO356_18325 0.85 -1.1
4,129,427 - AO356_18325 0.86 -1.3
4,129,427 - AO356_18325 0.86 -3.0
4,129,427 - AO356_18325 0.86 -3.2
4,129,455 + AO356_18325 0.88 -2.9
4,129,456 - AO356_18325 0.88 -0.4
4,129,456 - AO356_18325 0.88 -2.0
4,129,456 - AO356_18325 0.88 -2.0
4,129,516 + -2.6
4,129,516 + -3.2
4,129,517 - -2.9
4,129,517 - -3.1
4,129,612 + -0.1
4,129,613 - -0.6
4,129,614 + -2.3
4,129,674 + -1.9
4,129,674 + -1.7
4,129,674 + -1.2
4,129,674 + +0.1
4,129,674 + -2.1
4,129,674 + +0.1
4,129,675 - +0.2
4,129,675 - +0.2
4,129,675 - +0.1
4,129,743 + -0.1
4,129,743 + -0.0
4,129,743 + -0.5
4,129,744 - -1.0
4,129,744 - +0.3
4,129,752 + AO356_18330 0.10 -1.4
4,129,753 - AO356_18330 0.10 +0.5
4,129,753 - AO356_18330 0.10 -0.1
4,129,753 - AO356_18330 0.10 -0.9
4,129,871 + AO356_18330 0.35 -2.4
4,129,871 + AO356_18330 0.35 -1.6
4,129,871 + AO356_18330 0.35 -1.2
4,129,872 - AO356_18330 0.35 +0.2
4,129,872 - AO356_18330 0.35 -0.7
4,129,872 - AO356_18330 0.35 -0.4
4,129,907 + AO356_18330 0.42 -1.7
4,129,907 + AO356_18330 0.42 -1.1
4,129,907 + AO356_18330 0.42 -1.8
4,129,907 + AO356_18330 0.42 -0.4
4,129,950 - AO356_18330 0.51 +0.1
4,129,987 - AO356_18330 0.58 -0.1
4,129,987 - AO356_18330 0.58 -0.1
4,129,987 - AO356_18330 0.58 -0.2
4,130,034 - AO356_18330 0.68 +0.5
4,130,037 + AO356_18330 0.69 -1.7
4,130,037 + AO356_18330 0.69 -1.7
4,130,037 + AO356_18330 0.69 -1.1
4,130,067 + AO356_18330 0.75 -0.4
4,130,068 - AO356_18330 0.75 -1.4
4,130,239 + -1.2
4,130,289 + -1.2
4,130,380 + -2.2
4,130,387 - +0.3
4,130,420 + -2.8
4,130,421 - +0.7
4,130,442 - +0.0
4,130,442 - -0.6
4,130,442 - -2.0
4,130,442 - -0.8
4,130,487 + -0.6
4,130,524 + -1.0
4,130,525 - +1.6
4,130,525 - +0.4
4,130,525 - +0.4
4,130,539 + -2.5
4,130,539 + -0.8
4,130,539 + -1.1
4,130,540 - +0.4
4,130,546 + +0.2
4,130,546 + -0.6
4,130,546 + -0.7
4,130,546 + -3.8
4,130,547 - +0.3
4,130,596 + -2.6
4,130,607 - +0.4
4,130,612 - +0.3
4,130,612 - +0.6
4,130,662 + -0.1
4,130,662 + +0.2
4,130,663 - -0.5
4,130,706 + +0.0
4,130,732 + AO356_18335 0.12 -0.6
4,130,772 + AO356_18335 0.18 -2.6
4,130,773 - AO356_18335 0.19 +0.8
4,130,886 + AO356_18335 0.37 +1.2
4,130,886 + AO356_18335 0.37 -0.2
4,130,954 + AO356_18335 0.47 +1.1
4,130,954 + AO356_18335 0.47 +0.2
4,130,955 - AO356_18335 0.48 +1.3
4,130,985 + AO356_18335 0.52 +0.6
4,130,985 + AO356_18335 0.52 +1.5
4,130,986 - AO356_18335 0.52 -0.2
4,130,988 + AO356_18335 0.53 -1.0
4,130,988 + AO356_18335 0.53 -1.2
4,130,989 - AO356_18335 0.53 +0.1
4,131,023 + AO356_18335 0.58 -0.5
4,131,023 + AO356_18335 0.58 +0.5
4,131,023 + AO356_18335 0.58 -0.7
4,131,047 - AO356_18335 0.62 +0.4

Or see this region's nucleotide sequence