Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_04160

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_04155 and AO356_04160 are separated by 263 nucleotidesAO356_04160 and AO356_04165 are separated by 44 nucleotidesAO356_04165 and AO356_04170 are separated by 206 nucleotides AO356_04155: AO356_04155 - thioredoxin, at 934,102 to 934,833 _04155 AO356_04160: AO356_04160 - hypothetical protein, at 935,097 to 935,369 _04160 AO356_04165: AO356_04165 - hypothetical protein, at 935,414 to 935,974 _04165 AO356_04170: AO356_04170 - hypothetical protein, at 936,181 to 936,360 _04170 Position (kb) 935 936Strain fitness (log2 ratio) -1 0 1 2at 934.109 kb on + strandat 934.109 kb on + strandat 934.109 kb on + strandat 934.109 kb on + strandat 934.110 kb on - strandat 934.110 kb on - strandat 934.325 kb on - strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.534 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.588 kb on + strand, within AO356_04155at 934.589 kb on - strand, within AO356_04155at 934.589 kb on - strand, within AO356_04155at 934.594 kb on + strand, within AO356_04155at 934.594 kb on + strand, within AO356_04155at 934.595 kb on - strand, within AO356_04155at 934.645 kb on + strand, within AO356_04155at 934.645 kb on + strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.646 kb on - strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.678 kb on + strand, within AO356_04155at 934.679 kb on - strand, within AO356_04155at 934.688 kb on - strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.720 kb on + strand, within AO356_04155at 934.721 kb on - strand, within AO356_04155at 934.721 kb on - strand, within AO356_04155at 934.726 kb on + strand, within AO356_04155at 934.726 kb on + strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.727 kb on - strand, within AO356_04155at 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.795 kb on + strandat 934.796 kb on - strandat 934.958 kb on - strandat 934.966 kb on + strandat 934.967 kb on - strandat 935.015 kb on + strandat 935.015 kb on + strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.016 kb on - strandat 935.017 kb on + strandat 935.017 kb on + strandat 935.033 kb on - strandat 935.078 kb on - strandat 935.096 kb on + strandat 935.096 kb on + strandat 935.106 kb on + strandat 935.107 kb on - strandat 935.107 kb on - strandat 935.107 kb on - strandat 935.291 kb on - strand, within AO356_04160at 935.300 kb on - strand, within AO356_04160at 935.300 kb on - strand, within AO356_04160at 935.300 kb on - strand, within AO356_04160at 935.300 kb on - strand, within AO356_04160at 935.300 kb on - strand, within AO356_04160at 935.387 kb on + strandat 935.387 kb on + strandat 935.388 kb on - strandat 935.388 kb on - strandat 935.388 kb on - strandat 935.388 kb on - strandat 935.388 kb on - strandat 935.403 kb on + strandat 935.403 kb on + strandat 935.412 kb on - strandat 935.415 kb on + strandat 935.444 kb on + strandat 935.445 kb on - strandat 935.554 kb on + strand, within AO356_04165at 935.687 kb on + strand, within AO356_04165at 935.687 kb on + strand, within AO356_04165at 935.687 kb on + strand, within AO356_04165at 935.688 kb on - strand, within AO356_04165at 935.691 kb on + strand, within AO356_04165at 935.692 kb on - strand, within AO356_04165at 935.692 kb on - strand, within AO356_04165at 935.722 kb on + strand, within AO356_04165at 935.723 kb on - strand, within AO356_04165at 935.724 kb on + strand, within AO356_04165at 935.724 kb on + strand, within AO356_04165at 935.725 kb on - strand, within AO356_04165at 935.725 kb on - strand, within AO356_04165at 935.748 kb on + strand, within AO356_04165at 935.748 kb on + strand, within AO356_04165at 935.884 kb on - strand, within AO356_04165at 935.886 kb on + strand, within AO356_04165at 935.886 kb on + strand, within AO356_04165at 935.887 kb on - strand, within AO356_04165at 935.887 kb on - strand, within AO356_04165at 936.262 kb on - strand, within AO356_04170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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934,109 + +0.4
934,109 + +0.4
934,109 + -0.2
934,109 + +0.8
934,110 - -0.1
934,110 - +0.2
934,325 - AO356_04155 0.30 +0.3
934,534 + AO356_04155 0.59 +0.6
934,534 + AO356_04155 0.59 +0.0
934,534 + AO356_04155 0.59 +0.8
934,534 + AO356_04155 0.59 +0.5
934,588 + AO356_04155 0.66 -0.2
934,588 + AO356_04155 0.66 +0.4
934,588 + AO356_04155 0.66 +0.3
934,588 + AO356_04155 0.66 +0.9
934,588 + AO356_04155 0.66 +0.2
934,589 - AO356_04155 0.67 +0.3
934,589 - AO356_04155 0.67 -0.4
934,594 + AO356_04155 0.67 +1.4
934,594 + AO356_04155 0.67 -0.3
934,595 - AO356_04155 0.67 +0.0
934,645 + AO356_04155 0.74 -0.7
934,645 + AO356_04155 0.74 +0.1
934,646 - AO356_04155 0.74 +0.1
934,646 - AO356_04155 0.74 -0.7
934,646 - AO356_04155 0.74 +1.0
934,678 + AO356_04155 0.79 -0.1
934,678 + AO356_04155 0.79 +0.6
934,678 + AO356_04155 0.79 +0.9
934,678 + AO356_04155 0.79 +0.1
934,679 - AO356_04155 0.79 -0.5
934,688 - AO356_04155 0.80 +0.4
934,720 + AO356_04155 0.84 -0.3
934,720 + AO356_04155 0.84 +0.0
934,720 + AO356_04155 0.84 -0.0
934,720 + AO356_04155 0.84 +0.7
934,720 + AO356_04155 0.84 -1.1
934,720 + AO356_04155 0.84 -0.7
934,720 + AO356_04155 0.84 -0.1
934,721 - AO356_04155 0.85 -0.5
934,721 - AO356_04155 0.85 +0.5
934,726 + AO356_04155 0.85 -0.6
934,726 + AO356_04155 0.85 +0.1
934,727 - AO356_04155 0.85 +0.8
934,727 - AO356_04155 0.85 +0.6
934,727 - AO356_04155 0.85 +0.9
934,795 + -0.1
934,795 + +0.3
934,795 + -0.4
934,795 + -0.3
934,795 + +1.3
934,796 - -0.1
934,958 - -0.1
934,966 + +0.9
934,967 - -0.5
935,015 + +0.3
935,015 + -0.5
935,016 - -0.7
935,016 - +1.1
935,016 - +0.1
935,016 - -0.3
935,016 - +0.0
935,016 - -0.7
935,016 - +0.3
935,016 - -0.1
935,017 + +0.4
935,017 + -0.0
935,033 - -0.2
935,078 - +0.3
935,096 + -0.2
935,096 + -0.3
935,106 + +1.1
935,107 - +0.2
935,107 - +0.5
935,107 - -1.1
935,291 - AO356_04160 0.71 -0.8
935,300 - AO356_04160 0.74 +0.2
935,300 - AO356_04160 0.74 +1.1
935,300 - AO356_04160 0.74 -0.1
935,300 - AO356_04160 0.74 -0.4
935,300 - AO356_04160 0.74 -0.5
935,387 + +0.0
935,387 + -0.3
935,388 - +1.9
935,388 - -0.5
935,388 - +0.6
935,388 - -0.1
935,388 - +0.2
935,403 + -0.2
935,403 + -0.3
935,412 - +0.4
935,415 + -0.2
935,444 + -0.1
935,445 - +0.2
935,554 + AO356_04165 0.25 -0.1
935,687 + AO356_04165 0.49 +0.6
935,687 + AO356_04165 0.49 -1.2
935,687 + AO356_04165 0.49 +0.6
935,688 - AO356_04165 0.49 -0.6
935,691 + AO356_04165 0.49 -0.1
935,692 - AO356_04165 0.50 -0.3
935,692 - AO356_04165 0.50 -0.2
935,722 + AO356_04165 0.55 +0.2
935,723 - AO356_04165 0.55 +0.2
935,724 + AO356_04165 0.55 -0.8
935,724 + AO356_04165 0.55 -0.2
935,725 - AO356_04165 0.55 -0.1
935,725 - AO356_04165 0.55 +0.7
935,748 + AO356_04165 0.60 +1.8
935,748 + AO356_04165 0.60 +0.9
935,884 - AO356_04165 0.84 +0.1
935,886 + AO356_04165 0.84 -0.3
935,886 + AO356_04165 0.84 -1.0
935,887 - AO356_04165 0.84 +0.6
935,887 - AO356_04165 0.84 -0.2
936,262 - AO356_04170 0.45 +0.5

Or see this region's nucleotide sequence