Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_00080

Experiment: L-Malic (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO356_00070 and AO356_00075 are separated by 4 nucleotidesAO356_00075 and AO356_00080 are separated by 85 nucleotidesAO356_00080 and AO356_00085 are separated by 14 nucleotides AO356_00070: AO356_00070 - hypothetical protein, at 14,887 to 15,117 _00070 AO356_00075: AO356_00075 - cobyrinic acid a,c-diamide synthase, at 15,122 to 15,964 _00075 AO356_00080: AO356_00080 - hypothetical protein, at 16,050 to 16,259 _00080 AO356_00085: AO356_00085 - chromosome partitioning protein ParB, at 16,274 to 17,845 _00085 Position (kb) 16 17Strain fitness (log2 ratio) -1 0 1at 15.090 kb on + strand, within AO356_00070at 15.214 kb on - strand, within AO356_00075at 15.214 kb on - strand, within AO356_00075at 15.260 kb on + strand, within AO356_00075at 15.260 kb on + strand, within AO356_00075at 15.260 kb on + strand, within AO356_00075at 15.261 kb on - strand, within AO356_00075at 15.263 kb on + strand, within AO356_00075at 15.263 kb on + strand, within AO356_00075at 15.264 kb on - strand, within AO356_00075at 15.264 kb on - strand, within AO356_00075at 15.337 kb on - strand, within AO356_00075at 15.337 kb on - strand, within AO356_00075at 15.337 kb on - strand, within AO356_00075at 15.404 kb on - strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.411 kb on + strand, within AO356_00075at 15.412 kb on - strand, within AO356_00075at 15.412 kb on - strand, within AO356_00075at 15.414 kb on + strand, within AO356_00075at 15.414 kb on + strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.415 kb on - strand, within AO356_00075at 15.480 kb on + strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.481 kb on - strand, within AO356_00075at 15.508 kb on + strand, within AO356_00075at 15.508 kb on + strand, within AO356_00075at 15.509 kb on - strand, within AO356_00075at 15.562 kb on + strand, within AO356_00075at 15.562 kb on + strand, within AO356_00075at 15.748 kb on + strand, within AO356_00075at 15.748 kb on + strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.749 kb on - strand, within AO356_00075at 15.766 kb on - strand, within AO356_00075at 15.766 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.775 kb on - strand, within AO356_00075at 15.795 kb on - strand, within AO356_00075at 15.935 kb on - strandat 15.983 kb on - strandat 15.983 kb on - strandat 15.983 kb on - strandat 16.044 kb on - strandat 16.107 kb on - strand, within AO356_00080at 16.116 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.119 kb on + strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.120 kb on - strand, within AO356_00080at 16.188 kb on + strand, within AO356_00080at 16.373 kb on - strandat 16.378 kb on + strandat 16.409 kb on + strandat 16.446 kb on - strand, within AO356_00085at 16.523 kb on + strand, within AO356_00085at 16.524 kb on - strand, within AO356_00085at 16.546 kb on + strand, within AO356_00085at 16.547 kb on - strand, within AO356_00085at 16.549 kb on + strand, within AO356_00085at 16.550 kb on - strand, within AO356_00085at 16.890 kb on + strand, within AO356_00085at 16.894 kb on + strand, within AO356_00085at 16.894 kb on + strand, within AO356_00085at 16.895 kb on - strand, within AO356_00085at 17.117 kb on - strand, within AO356_00085at 17.236 kb on + strand, within AO356_00085at 17.236 kb on + strand, within AO356_00085at 17.237 kb on - strand, within AO356_00085at 17.237 kb on - strand, within AO356_00085

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
remove
15,090 + AO356_00070 0.88 +0.1
15,214 - AO356_00075 0.11 +0.4
15,214 - AO356_00075 0.11 +0.2
15,260 + AO356_00075 0.16 -0.0
15,260 + AO356_00075 0.16 +1.3
15,260 + AO356_00075 0.16 -0.3
15,261 - AO356_00075 0.16 +0.6
15,263 + AO356_00075 0.17 +0.9
15,263 + AO356_00075 0.17 +0.7
15,264 - AO356_00075 0.17 +0.6
15,264 - AO356_00075 0.17 -0.1
15,337 - AO356_00075 0.26 +0.2
15,337 - AO356_00075 0.26 +0.0
15,337 - AO356_00075 0.26 +0.3
15,404 - AO356_00075 0.33 -0.5
15,411 + AO356_00075 0.34 -0.3
15,411 + AO356_00075 0.34 -0.1
15,411 + AO356_00075 0.34 -0.2
15,412 - AO356_00075 0.34 +1.0
15,412 - AO356_00075 0.34 -0.7
15,414 + AO356_00075 0.35 +0.2
15,414 + AO356_00075 0.35 +0.7
15,415 - AO356_00075 0.35 +0.7
15,415 - AO356_00075 0.35 +0.7
15,415 - AO356_00075 0.35 +0.1
15,480 + AO356_00075 0.42 +0.4
15,481 - AO356_00075 0.43 -0.1
15,481 - AO356_00075 0.43 -0.5
15,481 - AO356_00075 0.43 +0.3
15,481 - AO356_00075 0.43 +0.5
15,481 - AO356_00075 0.43 +0.6
15,508 + AO356_00075 0.46 +0.1
15,508 + AO356_00075 0.46 +1.0
15,509 - AO356_00075 0.46 +0.2
15,562 + AO356_00075 0.52 +0.1
15,562 + AO356_00075 0.52 +0.3
15,748 + AO356_00075 0.74 -0.8
15,748 + AO356_00075 0.74 +0.1
15,749 - AO356_00075 0.74 +0.8
15,749 - AO356_00075 0.74 +0.6
15,749 - AO356_00075 0.74 +0.4
15,766 - AO356_00075 0.76 -0.6
15,766 - AO356_00075 0.76 -0.3
15,775 - AO356_00075 0.77 +1.4
15,775 - AO356_00075 0.77 +0.8
15,775 - AO356_00075 0.77 -0.4
15,775 - AO356_00075 0.77 -0.4
15,795 - AO356_00075 0.80 -0.2
15,935 - +0.2
15,983 - -0.8
15,983 - +0.3
15,983 - +0.9
16,044 - +1.3
16,107 - AO356_00080 0.27 +0.7
16,116 + AO356_00080 0.31 +0.6
16,119 + AO356_00080 0.33 -1.2
16,119 + AO356_00080 0.33 -0.2
16,119 + AO356_00080 0.33 +0.5
16,120 - AO356_00080 0.33 -0.2
16,120 - AO356_00080 0.33 +0.0
16,120 - AO356_00080 0.33 -0.8
16,120 - AO356_00080 0.33 -0.7
16,120 - AO356_00080 0.33 -0.3
16,188 + AO356_00080 0.66 -0.5
16,373 - +0.2
16,378 + -1.0
16,409 + -0.3
16,446 - AO356_00085 0.11 -1.1
16,523 + AO356_00085 0.16 +1.2
16,524 - AO356_00085 0.16 +0.8
16,546 + AO356_00085 0.17 -0.5
16,547 - AO356_00085 0.17 -0.5
16,549 + AO356_00085 0.17 +0.3
16,550 - AO356_00085 0.18 +0.7
16,890 + AO356_00085 0.39 +0.9
16,894 + AO356_00085 0.39 -0.3
16,894 + AO356_00085 0.39 -0.5
16,895 - AO356_00085 0.40 -1.3
17,117 - AO356_00085 0.54 +0.6
17,236 + AO356_00085 0.61 -0.4
17,236 + AO356_00085 0.61 -0.7
17,237 - AO356_00085 0.61 +0.0
17,237 - AO356_00085 0.61 +0.0

Or see this region's nucleotide sequence