Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_004485 and ABIE53_004486 are separated by 59 nucleotides ABIE53_004486 and ABIE53_004487 are separated by 403 nucleotides ABIE53_004487 and ABIE53_004488 are separated by 124 nucleotides ABIE53_004488 and ABIE53_004489 are separated by 69 nucleotides
ABIE53_004485: ABIE53_004485 - glucose 1-dehydrogenase, at 678,649 to 679,449
_004485
ABIE53_004486: ABIE53_004486 - hypothetical protein, at 679,509 to 679,631
_004486
ABIE53_004487: ABIE53_004487 - Lrp/AsnC family leucine-responsive transcriptional regulator, at 680,035 to 680,454
_004487
ABIE53_004488: ABIE53_004488 - 4'-phosphopantetheinyl transferase, at 680,579 to 681,280
_004488
ABIE53_004489: ABIE53_004489 - D-galactonate transporter, at 681,350 to 682,690
_004489
Position (kb) 680
681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 679.138 kb on + strand, within ABIE53_004485 at 679.292 kb on + strand, within ABIE53_004485 at 679.293 kb on - strand, within ABIE53_004485 at 679.293 kb on - strand, within ABIE53_004485 at 679.293 kb on - strand, within ABIE53_004485 at 679.293 kb on - strand, within ABIE53_004485 at 679.379 kb on - strand at 679.397 kb on + strand at 679.397 kb on + strand at 679.397 kb on + strand at 679.397 kb on + strand at 679.397 kb on + strand at 679.398 kb on - strand at 679.398 kb on - strand at 679.424 kb on - strand at 679.465 kb on - strand at 679.527 kb on - strand, within ABIE53_004486 at 679.551 kb on + strand, within ABIE53_004486 at 679.551 kb on + strand, within ABIE53_004486 at 679.551 kb on + strand, within ABIE53_004486 at 679.551 kb on + strand, within ABIE53_004486 at 679.552 kb on - strand, within ABIE53_004486 at 679.552 kb on - strand, within ABIE53_004486 at 679.552 kb on - strand, within ABIE53_004486 at 679.563 kb on + strand, within ABIE53_004486 at 679.563 kb on + strand, within ABIE53_004486 at 679.564 kb on - strand, within ABIE53_004486 at 679.568 kb on - strand, within ABIE53_004486 at 679.568 kb on - strand, within ABIE53_004486 at 679.614 kb on + strand, within ABIE53_004486 at 679.614 kb on + strand, within ABIE53_004486 at 679.615 kb on - strand, within ABIE53_004486 at 679.689 kb on - strand at 679.695 kb on + strand at 679.696 kb on + strand at 679.696 kb on + strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.697 kb on - strand at 679.818 kb on + strand at 679.869 kb on - strand at 679.941 kb on + strand at 680.138 kb on - strand, within ABIE53_004487 at 680.138 kb on - strand, within ABIE53_004487 at 680.149 kb on + strand, within ABIE53_004487 at 680.150 kb on - strand, within ABIE53_004487 at 680.276 kb on + strand, within ABIE53_004487 at 680.287 kb on + strand, within ABIE53_004487 at 680.287 kb on + strand, within ABIE53_004487 at 680.288 kb on - strand, within ABIE53_004487 at 680.305 kb on + strand, within ABIE53_004487 at 680.305 kb on + strand, within ABIE53_004487 at 680.311 kb on + strand, within ABIE53_004487 at 680.312 kb on - strand, within ABIE53_004487 at 680.312 kb on - strand, within ABIE53_004487 at 680.348 kb on - strand, within ABIE53_004487 at 680.374 kb on + strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.375 kb on - strand, within ABIE53_004487 at 680.397 kb on + strand, within ABIE53_004487 at 680.452 kb on + strand at 680.453 kb on - strand at 680.453 kb on - strand at 680.453 kb on - strand at 680.542 kb on + strand at 680.543 kb on - strand at 680.543 kb on - strand at 680.580 kb on + strand at 680.580 kb on + strand at 680.665 kb on + strand, within ABIE53_004488 at 680.665 kb on + strand, within ABIE53_004488 at 680.665 kb on + strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.666 kb on - strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.796 kb on + strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.797 kb on - strand, within ABIE53_004488 at 680.910 kb on - strand, within ABIE53_004488 at 680.910 kb on - strand, within ABIE53_004488 at 680.911 kb on + strand, within ABIE53_004488 at 681.031 kb on + strand, within ABIE53_004488 at 681.061 kb on + strand, within ABIE53_004488 at 681.062 kb on - strand, within ABIE53_004488 at 681.062 kb on - strand, within ABIE53_004488 at 681.307 kb on - strand at 681.317 kb on + strand at 681.334 kb on - strand at 681.335 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 679,138 + ABIE53_004485 0.61 +1.0 679,292 + ABIE53_004485 0.80 +0.3 679,293 - ABIE53_004485 0.80 +1.8 679,293 - ABIE53_004485 0.80 +1.8 679,293 - ABIE53_004485 0.80 -1.7 679,293 - ABIE53_004485 0.80 +1.0 679,379 - +2.0 679,397 + -0.6 679,397 + +1.2 679,397 + -0.0 679,397 + +1.8 679,397 + +1.3 679,398 - +0.9 679,398 - -1.1 679,424 - -0.3 679,465 - -2.9 679,527 - ABIE53_004486 0.15 +0.5 679,551 + ABIE53_004486 0.34 +0.1 679,551 + ABIE53_004486 0.34 +0.8 679,551 + ABIE53_004486 0.34 -0.9 679,551 + ABIE53_004486 0.34 +0.4 679,552 - ABIE53_004486 0.35 -1.7 679,552 - ABIE53_004486 0.35 +0.2 679,552 - ABIE53_004486 0.35 -1.7 679,563 + ABIE53_004486 0.44 -1.5 679,563 + ABIE53_004486 0.44 -0.1 679,564 - ABIE53_004486 0.45 -0.1 679,568 - ABIE53_004486 0.48 +1.0 679,568 - ABIE53_004486 0.48 +0.4 679,614 + ABIE53_004486 0.85 -0.8 679,614 + ABIE53_004486 0.85 -1.3 679,615 - ABIE53_004486 0.86 +0.8 679,689 - -0.8 679,695 + +2.2 679,696 + -0.4 679,696 + -1.0 679,697 - +0.1 679,697 - -0.4 679,697 - -0.9 679,697 - +0.3 679,697 - +2.3 679,697 - -0.3 679,697 - -1.0 679,697 - +0.8 679,697 - -0.0 679,697 - +1.3 679,818 + +1.5 679,869 - +2.3 679,941 + -0.2 680,138 - ABIE53_004487 0.25 -0.2 680,138 - ABIE53_004487 0.25 -0.2 680,149 + ABIE53_004487 0.27 -1.0 680,150 - ABIE53_004487 0.27 -1.1 680,276 + ABIE53_004487 0.57 -0.4 680,287 + ABIE53_004487 0.60 -0.7 680,287 + ABIE53_004487 0.60 +1.5 680,288 - ABIE53_004487 0.60 +1.3 680,305 + ABIE53_004487 0.64 -1.0 680,305 + ABIE53_004487 0.64 +1.1 680,311 + ABIE53_004487 0.66 -0.5 680,312 - ABIE53_004487 0.66 -0.8 680,312 - ABIE53_004487 0.66 +1.4 680,348 - ABIE53_004487 0.75 +2.3 680,374 + ABIE53_004487 0.81 -0.9 680,375 - ABIE53_004487 0.81 -0.7 680,375 - ABIE53_004487 0.81 -0.7 680,375 - ABIE53_004487 0.81 -0.9 680,397 + ABIE53_004487 0.86 +0.8 680,452 + +0.3 680,453 - +0.0 680,453 - -0.3 680,453 - -1.2 680,542 + +0.0 680,543 - -0.2 680,543 - -1.3 680,580 + +1.0 680,580 + +0.1 680,665 + ABIE53_004488 0.12 +0.1 680,665 + ABIE53_004488 0.12 -0.1 680,665 + ABIE53_004488 0.12 +0.2 680,666 - ABIE53_004488 0.12 +1.3 680,666 - ABIE53_004488 0.12 +0.6 680,666 - ABIE53_004488 0.12 -0.6 680,796 + ABIE53_004488 0.31 +1.0 680,796 + ABIE53_004488 0.31 +1.8 680,796 + ABIE53_004488 0.31 -1.0 680,796 + ABIE53_004488 0.31 -0.4 680,797 - ABIE53_004488 0.31 +1.0 680,797 - ABIE53_004488 0.31 +0.9 680,797 - ABIE53_004488 0.31 -1.2 680,797 - ABIE53_004488 0.31 -0.6 680,910 - ABIE53_004488 0.47 -0.2 680,910 - ABIE53_004488 0.47 +1.5 680,911 + ABIE53_004488 0.47 +0.3 681,031 + ABIE53_004488 0.64 +2.2 681,061 + ABIE53_004488 0.69 -0.7 681,062 - ABIE53_004488 0.69 +0.1 681,062 - ABIE53_004488 0.69 -0.4 681,307 - -1.4 681,317 + +2.0 681,334 - +1.3 681,335 + +0.8
Or see this region's nucleotide sequence