Experiment: butyrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_003879 and ABIE53_003880 overlap by 4 nucleotides ABIE53_003880 and ABIE53_003881 are separated by 257 nucleotides ABIE53_003881 and ABIE53_003882 are separated by 12 nucleotides
ABIE53_003879: ABIE53_003879 - uncharacterized protein YgbK (DUF1537 family), at 18,669 to 20,015
_003879
ABIE53_003880: ABIE53_003880 - 2-keto-3-deoxygluconate permease, at 20,012 to 21,169
_003880
ABIE53_003881: ABIE53_003881 - dihydroxyacetone kinase-like protein, at 21,427 to 22,053
_003881
ABIE53_003882: ABIE53_003882 - dihydroxyacetone kinase-like protein, at 22,066 to 23,076
_003882
Position (kb) 20
21
22 Strain fitness (log2 ratio) -2
-1
0
1
2 at 19.041 kb on + strand, within ABIE53_003879 at 19.042 kb on - strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.221 kb on + strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.222 kb on - strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.622 kb on + strand, within ABIE53_003879 at 19.623 kb on - strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.780 kb on + strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.781 kb on - strand, within ABIE53_003879 at 19.942 kb on + strand at 20.042 kb on + strand at 20.043 kb on - strand at 20.149 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.260 kb on - strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.332 kb on + strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.333 kb on - strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.459 kb on + strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.460 kb on - strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.559 kb on + strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.560 kb on - strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.586 kb on + strand, within ABIE53_003880 at 20.587 kb on - strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.607 kb on + strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.608 kb on - strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.778 kb on + strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.779 kb on - strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.820 kb on + strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.821 kb on - strand, within ABIE53_003880 at 20.921 kb on + strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.922 kb on - strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.981 kb on + strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 20.982 kb on - strand, within ABIE53_003880 at 21.065 kb on - strand at 21.065 kb on - strand at 21.136 kb on + strand at 21.137 kb on - strand at 21.163 kb on + strand at 21.164 kb on - strand at 21.164 kb on - strand at 21.231 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.261 kb on + strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.262 kb on - strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.265 kb on + strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.266 kb on - strand at 21.339 kb on + strand at 21.339 kb on + strand at 21.339 kb on + strand at 21.428 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.470 kb on + strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.471 kb on - strand at 21.757 kb on + strand, within ABIE53_003881 at 22.045 kb on + strand at 22.045 kb on + strand at 22.046 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction butyrate (C) remove 19,041 + ABIE53_003879 0.28 +0.2 19,042 - ABIE53_003879 0.28 -0.7 19,221 + ABIE53_003879 0.41 +2.3 19,221 + ABIE53_003879 0.41 -0.0 19,221 + ABIE53_003879 0.41 +0.8 19,221 + ABIE53_003879 0.41 +0.1 19,221 + ABIE53_003879 0.41 +0.5 19,222 - ABIE53_003879 0.41 -0.4 19,222 - ABIE53_003879 0.41 +1.0 19,622 + ABIE53_003879 0.71 +1.2 19,622 + ABIE53_003879 0.71 -0.5 19,623 - ABIE53_003879 0.71 -0.5 19,780 + ABIE53_003879 0.82 -1.0 19,780 + ABIE53_003879 0.82 +0.1 19,780 + ABIE53_003879 0.82 +0.1 19,780 + ABIE53_003879 0.82 -0.7 19,781 - ABIE53_003879 0.83 -0.9 19,781 - ABIE53_003879 0.83 -2.1 19,781 - ABIE53_003879 0.83 +0.4 19,781 - ABIE53_003879 0.83 +0.2 19,942 + -1.5 20,042 + -0.7 20,043 - +0.9 20,149 - ABIE53_003880 0.12 -0.2 20,260 - ABIE53_003880 0.21 -0.4 20,260 - ABIE53_003880 0.21 +0.7 20,332 + ABIE53_003880 0.28 -1.0 20,332 + ABIE53_003880 0.28 -0.2 20,332 + ABIE53_003880 0.28 -0.8 20,333 - ABIE53_003880 0.28 -0.8 20,333 - ABIE53_003880 0.28 -0.4 20,333 - ABIE53_003880 0.28 -0.6 20,459 + ABIE53_003880 0.39 +0.3 20,459 + ABIE53_003880 0.39 -0.8 20,459 + ABIE53_003880 0.39 -1.4 20,459 + ABIE53_003880 0.39 +1.3 20,459 + ABIE53_003880 0.39 -0.9 20,459 + ABIE53_003880 0.39 -1.7 20,459 + ABIE53_003880 0.39 -0.2 20,459 + ABIE53_003880 0.39 -0.7 20,459 + ABIE53_003880 0.39 +1.5 20,460 - ABIE53_003880 0.39 +0.5 20,460 - ABIE53_003880 0.39 +0.7 20,460 - ABIE53_003880 0.39 -0.7 20,460 - ABIE53_003880 0.39 +0.8 20,460 - ABIE53_003880 0.39 +0.3 20,559 + ABIE53_003880 0.47 +1.0 20,559 + ABIE53_003880 0.47 -1.1 20,559 + ABIE53_003880 0.47 -0.1 20,559 + ABIE53_003880 0.47 +0.5 20,559 + ABIE53_003880 0.47 -0.7 20,560 - ABIE53_003880 0.47 -0.6 20,560 - ABIE53_003880 0.47 -0.2 20,586 + ABIE53_003880 0.50 -0.0 20,586 + ABIE53_003880 0.50 -1.7 20,587 - ABIE53_003880 0.50 -0.6 20,607 + ABIE53_003880 0.51 -1.4 20,607 + ABIE53_003880 0.51 +1.7 20,607 + ABIE53_003880 0.51 +0.3 20,608 - ABIE53_003880 0.51 +0.1 20,608 - ABIE53_003880 0.51 -0.0 20,608 - ABIE53_003880 0.51 +0.6 20,608 - ABIE53_003880 0.51 +1.3 20,608 - ABIE53_003880 0.51 -0.8 20,608 - ABIE53_003880 0.51 -0.4 20,608 - ABIE53_003880 0.51 +0.6 20,778 + ABIE53_003880 0.66 -0.4 20,778 + ABIE53_003880 0.66 +2.3 20,778 + ABIE53_003880 0.66 +1.2 20,778 + ABIE53_003880 0.66 -1.5 20,778 + ABIE53_003880 0.66 -1.1 20,778 + ABIE53_003880 0.66 -0.2 20,778 + ABIE53_003880 0.66 +1.1 20,778 + ABIE53_003880 0.66 +1.0 20,779 - ABIE53_003880 0.66 +0.3 20,779 - ABIE53_003880 0.66 -0.7 20,779 - ABIE53_003880 0.66 -1.5 20,779 - ABIE53_003880 0.66 -0.2 20,779 - ABIE53_003880 0.66 -0.1 20,779 - ABIE53_003880 0.66 -0.6 20,779 - ABIE53_003880 0.66 +0.8 20,779 - ABIE53_003880 0.66 -1.9 20,779 - ABIE53_003880 0.66 -0.7 20,820 + ABIE53_003880 0.70 -0.4 20,820 + ABIE53_003880 0.70 -0.5 20,820 + ABIE53_003880 0.70 -0.0 20,820 + ABIE53_003880 0.70 -1.0 20,821 - ABIE53_003880 0.70 +0.1 20,821 - ABIE53_003880 0.70 +1.1 20,821 - ABIE53_003880 0.70 +0.2 20,821 - ABIE53_003880 0.70 -0.9 20,821 - ABIE53_003880 0.70 +0.0 20,821 - ABIE53_003880 0.70 +1.5 20,921 + ABIE53_003880 0.78 +2.5 20,922 - ABIE53_003880 0.79 -0.8 20,922 - ABIE53_003880 0.79 +0.1 20,981 + ABIE53_003880 0.84 -0.9 20,981 + ABIE53_003880 0.84 +0.1 20,981 + ABIE53_003880 0.84 +1.3 20,981 + ABIE53_003880 0.84 -0.7 20,982 - ABIE53_003880 0.84 +0.5 20,982 - ABIE53_003880 0.84 +1.1 20,982 - ABIE53_003880 0.84 +0.5 20,982 - ABIE53_003880 0.84 -0.0 21,065 - -1.1 21,065 - -0.1 21,136 + -0.6 21,137 - -0.5 21,163 + -1.3 21,164 - -1.3 21,164 - -0.5 21,231 + -1.1 21,261 + -1.9 21,261 + +1.3 21,261 + -1.0 21,261 + +1.3 21,261 + +1.9 21,261 + -0.2 21,261 + -0.3 21,261 + -0.6 21,261 + -1.1 21,262 - -0.0 21,262 - -0.4 21,262 - +0.6 21,262 - -0.4 21,262 - -1.2 21,265 + +0.4 21,265 + +1.1 21,265 + +1.1 21,265 + +0.0 21,265 + -0.3 21,265 + +0.9 21,265 + +1.1 21,265 + -0.1 21,265 + -0.4 21,265 + +0.7 21,265 + +0.3 21,265 + +1.3 21,265 + -1.0 21,265 + +0.8 21,265 + -0.4 21,266 - +1.2 21,266 - -1.1 21,266 - -0.3 21,266 - -2.3 21,266 - +0.5 21,266 - +0.6 21,266 - -0.5 21,266 - -1.2 21,266 - -0.8 21,266 - +0.7 21,266 - +0.3 21,339 + -0.2 21,339 + +2.3 21,339 + -0.0 21,428 + +0.7 21,470 + -0.4 21,470 + -1.2 21,470 + -1.1 21,470 + -0.1 21,471 - -0.4 21,471 - -0.1 21,471 - -0.2 21,471 - -1.6 21,471 - -1.7 21,471 - -0.8 21,757 + ABIE53_003881 0.53 -0.6 22,045 + -0.3 22,045 + -0.5 22,046 - +1.7
Or see this region's nucleotide sequence