Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02155 and SMc02154 are separated by 14 nucleotides SMc02154 and SMc04429 overlap by 4 nucleotides SMc04429 and SMc02153 are separated by 1 nucleotides
SMc02155: SMc02155 - hypothetical protein, at 548,970 to 551,798
SMc02155
SMc02154: SMc02154 - hypothetical protein, at 551,813 to 554,713
SMc02154
SMc04429: SMc04429 - hypothetical protein, at 554,710 to 555,357
SMc04429
SMc02153: SMc02153 - hypothetical protein, at 555,359 to 556,690
SMc02153
Position (kb) 551
552
553
554
555 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 550.819 kb on + strand, within SMc02155 at 550.819 kb on + strand, within SMc02155 at 550.820 kb on - strand, within SMc02155 at 550.822 kb on + strand, within SMc02155 at 550.823 kb on - strand, within SMc02155 at 550.838 kb on + strand, within SMc02155 at 550.870 kb on + strand, within SMc02155 at 550.871 kb on - strand, within SMc02155 at 550.948 kb on - strand, within SMc02155 at 551.277 kb on - strand, within SMc02155 at 551.350 kb on - strand, within SMc02155 at 551.518 kb on + strand at 551.519 kb on - strand at 551.531 kb on + strand at 551.531 kb on + strand at 551.531 kb on + strand at 551.532 kb on - strand at 551.532 kb on - strand at 551.773 kb on - strand at 551.885 kb on + strand at 551.886 kb on - strand at 551.898 kb on + strand at 551.941 kb on + strand at 551.942 kb on - strand at 551.942 kb on - strand at 551.942 kb on - strand at 552.053 kb on + strand at 552.053 kb on + strand at 552.053 kb on + strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.054 kb on - strand at 552.150 kb on + strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.151 kb on - strand, within SMc02154 at 552.244 kb on - strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.313 kb on + strand, within SMc02154 at 552.372 kb on + strand, within SMc02154 at 552.372 kb on + strand, within SMc02154 at 552.373 kb on - strand, within SMc02154 at 552.406 kb on + strand, within SMc02154 at 552.564 kb on - strand, within SMc02154 at 552.564 kb on - strand, within SMc02154 at 552.615 kb on - strand, within SMc02154 at 552.643 kb on + strand, within SMc02154 at 552.697 kb on + strand, within SMc02154 at 552.697 kb on + strand, within SMc02154 at 552.698 kb on - strand, within SMc02154 at 552.742 kb on - strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand at 552.744 kb on + strand, within SMc02154 at 552.744 kb on + strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.745 kb on - strand, within SMc02154 at 552.748 kb on + strand, within SMc02154 at 552.748 kb on + strand, within SMc02154 at 552.749 kb on - strand, within SMc02154 at 552.806 kb on - strand, within SMc02154 at 552.806 kb on - strand, within SMc02154 at 552.822 kb on - strand, within SMc02154 at 552.903 kb on - strand, within SMc02154 at 552.969 kb on + strand, within SMc02154 at 553.001 kb on - strand, within SMc02154 at 553.001 kb on - strand, within SMc02154 at 553.244 kb on + strand, within SMc02154 at 553.244 kb on + strand, within SMc02154 at 553.244 kb on + strand, within SMc02154 at 553.245 kb on - strand, within SMc02154 at 553.245 kb on - strand, within SMc02154 at 553.245 kb on - strand, within SMc02154 at 553.245 kb on - strand, within SMc02154 at 553.246 kb on + strand, within SMc02154 at 553.246 kb on + strand, within SMc02154 at 553.247 kb on - strand, within SMc02154 at 553.278 kb on + strand, within SMc02154 at 553.287 kb on - strand, within SMc02154 at 553.325 kb on - strand, within SMc02154 at 553.373 kb on + strand, within SMc02154 at 553.414 kb on + strand, within SMc02154 at 553.418 kb on + strand, within SMc02154 at 553.471 kb on - strand, within SMc02154 at 553.511 kb on + strand, within SMc02154 at 553.512 kb on - strand, within SMc02154 at 553.512 kb on - strand, within SMc02154 at 553.574 kb on + strand, within SMc02154 at 553.579 kb on - strand, within SMc02154 at 553.579 kb on - strand, within SMc02154 at 553.579 kb on - strand, within SMc02154 at 553.582 kb on + strand, within SMc02154 at 553.583 kb on - strand, within SMc02154 at 553.583 kb on - strand, within SMc02154 at 553.583 kb on - strand, within SMc02154 at 553.659 kb on + strand, within SMc02154 at 553.659 kb on + strand, within SMc02154 at 553.659 kb on + strand, within SMc02154 at 553.660 kb on - strand, within SMc02154 at 553.770 kb on + strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.771 kb on - strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.800 kb on + strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.801 kb on - strand, within SMc02154 at 553.886 kb on + strand, within SMc02154 at 553.887 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.892 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.919 kb on - strand, within SMc02154 at 553.942 kb on + strand, within SMc02154 at 553.943 kb on - strand, within SMc02154 at 554.040 kb on + strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.041 kb on - strand, within SMc02154 at 554.043 kb on + strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.044 kb on - strand, within SMc02154 at 554.208 kb on + strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.209 kb on - strand, within SMc02154 at 554.425 kb on + strand at 554.696 kb on + strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.697 kb on - strand at 554.768 kb on + strand at 554.768 kb on + strand at 554.769 kb on - strand at 555.028 kb on + strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.029 kb on - strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.084 kb on + strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.085 kb on - strand, within SMc04429 at 555.131 kb on - strand, within SMc04429 at 555.156 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.172 kb on + strand, within SMc04429 at 555.173 kb on - strand, within SMc04429 at 555.210 kb on - strand, within SMc04429
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 550,819 + SMc02155 0.65 -0.4 550,819 + SMc02155 0.65 -1.0 550,820 - SMc02155 0.65 -0.8 550,822 + SMc02155 0.65 -0.9 550,823 - SMc02155 0.66 -0.6 550,838 + SMc02155 0.66 -0.9 550,870 + SMc02155 0.67 -0.8 550,871 - SMc02155 0.67 -1.0 550,948 - SMc02155 0.70 -0.4 551,277 - SMc02155 0.82 -0.1 551,350 - SMc02155 0.84 +0.2 551,518 + -0.7 551,519 - -0.9 551,531 + +0.7 551,531 + -1.0 551,531 + +0.8 551,532 - +0.1 551,532 - -0.2 551,773 - -0.3 551,885 + -0.2 551,886 - +0.0 551,898 + -2.0 551,941 + -1.8 551,942 - -0.0 551,942 - -0.3 551,942 - -1.0 552,053 + -1.0 552,053 + -1.3 552,053 + -3.8 552,054 - -0.9 552,054 - +0.9 552,054 - -1.5 552,054 - -0.8 552,150 + SMc02154 0.12 -0.6 552,151 - SMc02154 0.12 -0.1 552,151 - SMc02154 0.12 -0.9 552,151 - SMc02154 0.12 -1.6 552,244 - SMc02154 0.15 -0.7 552,313 + SMc02154 0.17 -0.3 552,313 + SMc02154 0.17 -0.5 552,313 + SMc02154 0.17 -0.7 552,372 + SMc02154 0.19 -0.8 552,372 + SMc02154 0.19 +0.0 552,373 - SMc02154 0.19 +2.1 552,406 + SMc02154 0.20 -0.4 552,564 - SMc02154 0.26 -0.5 552,564 - SMc02154 0.26 -0.9 552,615 - SMc02154 0.28 +0.8 552,643 + SMc02154 0.29 +0.0 552,697 + SMc02154 0.30 -1.3 552,697 + SMc02154 0.30 -0.7 552,698 - SMc02154 0.31 -0.8 552,742 - SMc02154 0.32 -0.2 552,744 + SMc02154 0.32 -0.8 552,744 + SMc02154 0.32 -0.3 552,744 + SMc02154 0.32 -0.6 552,744 + +0.1 552,744 + SMc02154 0.32 +0.8 552,744 + SMc02154 0.32 -0.9 552,745 - SMc02154 0.32 -1.3 552,745 - SMc02154 0.32 -0.5 552,745 - SMc02154 0.32 -1.1 552,745 - SMc02154 0.32 -1.5 552,748 + SMc02154 0.32 -0.9 552,748 + SMc02154 0.32 -0.7 552,749 - SMc02154 0.32 -1.2 552,806 - SMc02154 0.34 -0.3 552,806 - SMc02154 0.34 -1.1 552,822 - SMc02154 0.35 -0.7 552,903 - SMc02154 0.38 -0.6 552,969 + SMc02154 0.40 -0.7 553,001 - SMc02154 0.41 +0.7 553,001 - SMc02154 0.41 -1.3 553,244 + SMc02154 0.49 -1.3 553,244 + SMc02154 0.49 -0.6 553,244 + SMc02154 0.49 -1.2 553,245 - SMc02154 0.49 +0.1 553,245 - SMc02154 0.49 -0.6 553,245 - SMc02154 0.49 -0.3 553,245 - SMc02154 0.49 -0.1 553,246 + SMc02154 0.49 -1.4 553,246 + SMc02154 0.49 +0.7 553,247 - SMc02154 0.49 +0.0 553,278 + SMc02154 0.50 -2.0 553,287 - SMc02154 0.51 +0.1 553,325 - SMc02154 0.52 -0.3 553,373 + SMc02154 0.54 +0.1 553,414 + SMc02154 0.55 -0.6 553,418 + SMc02154 0.55 -0.4 553,471 - SMc02154 0.57 -0.3 553,511 + SMc02154 0.59 -1.2 553,512 - SMc02154 0.59 -0.3 553,512 - SMc02154 0.59 -0.1 553,574 + SMc02154 0.61 -1.3 553,579 - SMc02154 0.61 -0.3 553,579 - SMc02154 0.61 -0.5 553,579 - SMc02154 0.61 -2.3 553,582 + SMc02154 0.61 +1.7 553,583 - SMc02154 0.61 -0.7 553,583 - SMc02154 0.61 -1.8 553,583 - SMc02154 0.61 -0.2 553,659 + SMc02154 0.64 -0.6 553,659 + SMc02154 0.64 -0.3 553,659 + SMc02154 0.64 -2.1 553,660 - SMc02154 0.64 +0.9 553,770 + SMc02154 0.67 -0.0 553,771 - SMc02154 0.67 -0.2 553,771 - SMc02154 0.67 -0.2 553,800 + SMc02154 0.68 -0.2 553,800 + SMc02154 0.68 +1.1 553,801 - SMc02154 0.69 +0.0 553,801 - SMc02154 0.69 -0.7 553,801 - SMc02154 0.69 +0.7 553,886 + SMc02154 0.71 -0.7 553,887 - SMc02154 0.71 -0.4 553,892 - SMc02154 0.72 -1.2 553,892 - SMc02154 0.72 -1.5 553,919 - SMc02154 0.73 -0.4 553,919 - SMc02154 0.73 -1.2 553,942 + SMc02154 0.73 -3.6 553,943 - SMc02154 0.73 -1.0 554,040 + SMc02154 0.77 -1.0 554,041 - SMc02154 0.77 +0.3 554,041 - SMc02154 0.77 +0.0 554,043 + SMc02154 0.77 -0.6 554,044 - SMc02154 0.77 -0.8 554,044 - SMc02154 0.77 -2.1 554,208 + SMc02154 0.83 -0.9 554,209 - SMc02154 0.83 +0.4 554,209 - SMc02154 0.83 -1.6 554,209 - SMc02154 0.83 -0.9 554,425 + -0.4 554,696 + +0.3 554,697 - -0.6 554,697 - -0.5 554,697 - -0.8 554,697 - +0.1 554,768 + +0.2 554,768 + -0.1 554,769 - +0.3 555,028 + SMc04429 0.49 +0.0 555,029 - SMc04429 0.49 -1.1 555,029 - SMc04429 0.49 +0.7 555,084 + SMc04429 0.58 -0.0 555,084 + SMc04429 0.58 -0.0 555,085 - SMc04429 0.58 +0.1 555,085 - SMc04429 0.58 -0.6 555,131 - SMc04429 0.65 -1.3 555,156 + SMc04429 0.69 +0.3 555,172 + SMc04429 0.71 +0.7 555,172 + SMc04429 0.71 -1.3 555,172 + SMc04429 0.71 -0.4 555,172 + SMc04429 0.71 +0.2 555,172 + SMc04429 0.71 +0.0 555,172 + SMc04429 0.71 -0.0 555,173 - SMc04429 0.71 +0.2 555,210 - SMc04429 0.77 -1.1
Or see this region's nucleotide sequence