Strain Fitness in Sinorhizobium meliloti 1021 around SMc01468

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01466 and SMc01467 are separated by 127 nucleotidesSMc01467 and SMc01468 are separated by 362 nucleotidesSMc01468 and SMc01469 are separated by 2 nucleotides SMc01466: SMc01466 - transposase, at 2,313,447 to 2,314,523 SMc01466 SMc01467: SMc01467 - signal peptide protein, at 2,314,651 to 2,315,040 SMc01467 SMc01468: SMc01468 - chemotaxis protein, at 2,315,403 to 2,315,867 SMc01468 SMc01469: SMc01469 - methyl accepting chemotaxis transmembrane protein, at 2,315,870 to 2,317,939 SMc01469 Position (kb) 2315 2316Strain fitness (log2 ratio) -2 -1 0 1 2at 2314.514 kb on + strandat 2314.577 kb on + strandat 2314.577 kb on + strandat 2314.577 kb on + strandat 2314.578 kb on - strandat 2314.578 kb on - strandat 2314.578 kb on - strandat 2314.578 kb on - strandat 2314.578 kb on - strandat 2314.642 kb on + strandat 2314.643 kb on - strandat 2314.685 kb on + strandat 2314.685 kb on + strandat 2314.686 kb on - strandat 2314.686 kb on - strandat 2314.712 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.722 kb on + strand, within SMc01467at 2314.723 kb on - strand, within SMc01467at 2314.723 kb on - strand, within SMc01467at 2314.723 kb on - strand, within SMc01467at 2314.724 kb on + strand, within SMc01467at 2314.724 kb on + strand, within SMc01467at 2314.784 kb on + strand, within SMc01467at 2314.785 kb on - strand, within SMc01467at 2314.814 kb on + strand, within SMc01467at 2314.815 kb on - strandat 2314.815 kb on - strand, within SMc01467at 2314.844 kb on + strand, within SMc01467at 2314.845 kb on - strand, within SMc01467at 2314.845 kb on - strand, within SMc01467at 2314.874 kb on + strand, within SMc01467at 2314.874 kb on + strand, within SMc01467at 2314.875 kb on - strand, within SMc01467at 2314.875 kb on - strand, within SMc01467at 2314.875 kb on - strand, within SMc01467at 2314.875 kb on - strand, within SMc01467at 2314.877 kb on + strand, within SMc01467at 2314.877 kb on + strand, within SMc01467at 2314.878 kb on - strand, within SMc01467at 2314.878 kb on - strand, within SMc01467at 2314.878 kb on - strand, within SMc01467at 2314.878 kb on - strand, within SMc01467at 2314.878 kb on - strand, within SMc01467at 2314.897 kb on + strand, within SMc01467at 2314.929 kb on + strand, within SMc01467at 2314.929 kb on + strand, within SMc01467at 2314.930 kb on - strand, within SMc01467at 2314.949 kb on + strand, within SMc01467at 2314.952 kb on + strand, within SMc01467at 2314.952 kb on + strand, within SMc01467at 2314.952 kb on + strand, within SMc01467at 2314.952 kb on + strand, within SMc01467at 2314.952 kb on + strand, within SMc01467at 2314.953 kb on - strand, within SMc01467at 2315.089 kb on + strandat 2315.089 kb on + strandat 2315.089 kb on + strandat 2315.089 kb on + strandat 2315.090 kb on - strandat 2315.131 kb on + strandat 2315.346 kb on + strandat 2315.405 kb on - strandat 2315.722 kb on + strand, within SMc01468at 2315.723 kb on - strand, within SMc01468at 2316.193 kb on + strand, within SMc01469at 2316.193 kb on + strand, within SMc01469at 2316.193 kb on + strand, within SMc01469at 2316.193 kb on + strand, within SMc01469at 2316.325 kb on + strand, within SMc01469at 2316.325 kb on + strand, within SMc01469at 2316.326 kb on - strand, within SMc01469at 2316.326 kb on - strand, within SMc01469at 2316.443 kb on - strand, within SMc01469

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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2,314,514 + -1.5
2,314,577 + -0.2
2,314,577 + +0.3
2,314,577 + +1.3
2,314,578 - -2.0
2,314,578 - +0.0
2,314,578 - +0.5
2,314,578 - -0.7
2,314,578 - -0.1
2,314,642 + -1.4
2,314,643 - -0.8
2,314,685 + -1.2
2,314,685 + +0.2
2,314,686 - -0.1
2,314,686 - -0.1
2,314,712 + SMc01467 0.16 +1.1
2,314,722 + SMc01467 0.18 -0.4
2,314,722 + SMc01467 0.18 -0.3
2,314,722 + SMc01467 0.18 +0.5
2,314,722 + SMc01467 0.18 +0.4
2,314,722 + SMc01467 0.18 -0.3
2,314,722 + SMc01467 0.18 -0.6
2,314,723 - SMc01467 0.18 -0.0
2,314,723 - SMc01467 0.18 +0.1
2,314,723 - SMc01467 0.18 +0.1
2,314,724 + SMc01467 0.19 +1.0
2,314,724 + SMc01467 0.19 -0.0
2,314,784 + SMc01467 0.34 +0.4
2,314,785 - SMc01467 0.34 -0.3
2,314,814 + SMc01467 0.42 -0.3
2,314,815 - -0.3
2,314,815 - SMc01467 0.42 -0.3
2,314,844 + SMc01467 0.49 -0.0
2,314,845 - SMc01467 0.50 +0.0
2,314,845 - SMc01467 0.50 -1.7
2,314,874 + SMc01467 0.57 +0.5
2,314,874 + SMc01467 0.57 +0.4
2,314,875 - SMc01467 0.57 +0.0
2,314,875 - SMc01467 0.57 +0.2
2,314,875 - SMc01467 0.57 +1.5
2,314,875 - SMc01467 0.57 +0.1
2,314,877 + SMc01467 0.58 -1.6
2,314,877 + SMc01467 0.58 +0.1
2,314,878 - SMc01467 0.58 +0.2
2,314,878 - SMc01467 0.58 +1.9
2,314,878 - SMc01467 0.58 -0.3
2,314,878 - SMc01467 0.58 -0.4
2,314,878 - SMc01467 0.58 -1.1
2,314,897 + SMc01467 0.63 -0.3
2,314,929 + SMc01467 0.71 +0.5
2,314,929 + SMc01467 0.71 -0.4
2,314,930 - SMc01467 0.72 +0.4
2,314,949 + SMc01467 0.76 +0.9
2,314,952 + SMc01467 0.77 +0.1
2,314,952 + SMc01467 0.77 -0.3
2,314,952 + SMc01467 0.77 -0.1
2,314,952 + SMc01467 0.77 -1.0
2,314,952 + SMc01467 0.77 -1.7
2,314,953 - SMc01467 0.77 +0.1
2,315,089 + -0.3
2,315,089 + +0.1
2,315,089 + +0.8
2,315,089 + -0.4
2,315,090 - -0.7
2,315,131 + +0.1
2,315,346 + +0.5
2,315,405 - -2.4
2,315,722 + SMc01468 0.69 -1.5
2,315,723 - SMc01468 0.69 -0.4
2,316,193 + SMc01469 0.16 -0.2
2,316,193 + SMc01469 0.16 +0.3
2,316,193 + SMc01469 0.16 -0.3
2,316,193 + SMc01469 0.16 -0.6
2,316,325 + SMc01469 0.22 +0.6
2,316,325 + SMc01469 0.22 +0.8
2,316,326 - SMc01469 0.22 -0.0
2,316,326 - SMc01469 0.22 +0.5
2,316,443 - SMc01469 0.28 +0.6

Or see this region's nucleotide sequence