Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01466 and SMc01467 are separated by 127 nucleotides SMc01467 and SMc01468 are separated by 362 nucleotides SMc01468 and SMc01469 are separated by 2 nucleotides
SMc01466: SMc01466 - transposase, at 2,313,447 to 2,314,523
SMc01466
SMc01467: SMc01467 - signal peptide protein, at 2,314,651 to 2,315,040
SMc01467
SMc01468: SMc01468 - chemotaxis protein, at 2,315,403 to 2,315,867
SMc01468
SMc01469: SMc01469 - methyl accepting chemotaxis transmembrane protein, at 2,315,870 to 2,317,939
SMc01469
Position (kb)
2315
2316 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2314.514 kb on + strand at 2314.577 kb on + strand at 2314.577 kb on + strand at 2314.577 kb on + strand at 2314.578 kb on - strand at 2314.578 kb on - strand at 2314.578 kb on - strand at 2314.578 kb on - strand at 2314.578 kb on - strand at 2314.642 kb on + strand at 2314.643 kb on - strand at 2314.685 kb on + strand at 2314.685 kb on + strand at 2314.686 kb on - strand at 2314.686 kb on - strand at 2314.712 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.722 kb on + strand, within SMc01467 at 2314.723 kb on - strand, within SMc01467 at 2314.723 kb on - strand, within SMc01467 at 2314.723 kb on - strand, within SMc01467 at 2314.724 kb on + strand, within SMc01467 at 2314.724 kb on + strand, within SMc01467 at 2314.784 kb on + strand, within SMc01467 at 2314.785 kb on - strand, within SMc01467 at 2314.814 kb on + strand, within SMc01467 at 2314.815 kb on - strand at 2314.815 kb on - strand, within SMc01467 at 2314.844 kb on + strand, within SMc01467 at 2314.845 kb on - strand, within SMc01467 at 2314.845 kb on - strand, within SMc01467 at 2314.874 kb on + strand, within SMc01467 at 2314.874 kb on + strand, within SMc01467 at 2314.875 kb on - strand, within SMc01467 at 2314.875 kb on - strand, within SMc01467 at 2314.875 kb on - strand, within SMc01467 at 2314.875 kb on - strand, within SMc01467 at 2314.877 kb on + strand, within SMc01467 at 2314.877 kb on + strand, within SMc01467 at 2314.878 kb on - strand, within SMc01467 at 2314.878 kb on - strand, within SMc01467 at 2314.878 kb on - strand, within SMc01467 at 2314.878 kb on - strand, within SMc01467 at 2314.878 kb on - strand, within SMc01467 at 2314.897 kb on + strand, within SMc01467 at 2314.929 kb on + strand, within SMc01467 at 2314.929 kb on + strand, within SMc01467 at 2314.930 kb on - strand, within SMc01467 at 2314.949 kb on + strand, within SMc01467 at 2314.952 kb on + strand, within SMc01467 at 2314.952 kb on + strand, within SMc01467 at 2314.952 kb on + strand, within SMc01467 at 2314.952 kb on + strand, within SMc01467 at 2314.952 kb on + strand, within SMc01467 at 2314.953 kb on - strand, within SMc01467 at 2315.089 kb on + strand at 2315.089 kb on + strand at 2315.089 kb on + strand at 2315.089 kb on + strand at 2315.090 kb on - strand at 2315.131 kb on + strand at 2315.346 kb on + strand at 2315.405 kb on - strand at 2315.722 kb on + strand, within SMc01468 at 2315.723 kb on - strand, within SMc01468 at 2316.193 kb on + strand, within SMc01469 at 2316.193 kb on + strand, within SMc01469 at 2316.193 kb on + strand, within SMc01469 at 2316.193 kb on + strand, within SMc01469 at 2316.325 kb on + strand, within SMc01469 at 2316.325 kb on + strand, within SMc01469 at 2316.326 kb on - strand, within SMc01469 at 2316.326 kb on - strand, within SMc01469 at 2316.443 kb on - strand, within SMc01469
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 2,314,514 + -1.5 2,314,577 + -0.2 2,314,577 + +0.3 2,314,577 + +1.3 2,314,578 - -2.0 2,314,578 - +0.0 2,314,578 - +0.5 2,314,578 - -0.7 2,314,578 - -0.1 2,314,642 + -1.4 2,314,643 - -0.8 2,314,685 + -1.2 2,314,685 + +0.2 2,314,686 - -0.1 2,314,686 - -0.1 2,314,712 + SMc01467 0.16 +1.1 2,314,722 + SMc01467 0.18 -0.4 2,314,722 + SMc01467 0.18 -0.3 2,314,722 + SMc01467 0.18 +0.5 2,314,722 + SMc01467 0.18 +0.4 2,314,722 + SMc01467 0.18 -0.3 2,314,722 + SMc01467 0.18 -0.6 2,314,723 - SMc01467 0.18 -0.0 2,314,723 - SMc01467 0.18 +0.1 2,314,723 - SMc01467 0.18 +0.1 2,314,724 + SMc01467 0.19 +1.0 2,314,724 + SMc01467 0.19 -0.0 2,314,784 + SMc01467 0.34 +0.4 2,314,785 - SMc01467 0.34 -0.3 2,314,814 + SMc01467 0.42 -0.3 2,314,815 - -0.3 2,314,815 - SMc01467 0.42 -0.3 2,314,844 + SMc01467 0.49 -0.0 2,314,845 - SMc01467 0.50 +0.0 2,314,845 - SMc01467 0.50 -1.7 2,314,874 + SMc01467 0.57 +0.5 2,314,874 + SMc01467 0.57 +0.4 2,314,875 - SMc01467 0.57 +0.0 2,314,875 - SMc01467 0.57 +0.2 2,314,875 - SMc01467 0.57 +1.5 2,314,875 - SMc01467 0.57 +0.1 2,314,877 + SMc01467 0.58 -1.6 2,314,877 + SMc01467 0.58 +0.1 2,314,878 - SMc01467 0.58 +0.2 2,314,878 - SMc01467 0.58 +1.9 2,314,878 - SMc01467 0.58 -0.3 2,314,878 - SMc01467 0.58 -0.4 2,314,878 - SMc01467 0.58 -1.1 2,314,897 + SMc01467 0.63 -0.3 2,314,929 + SMc01467 0.71 +0.5 2,314,929 + SMc01467 0.71 -0.4 2,314,930 - SMc01467 0.72 +0.4 2,314,949 + SMc01467 0.76 +0.9 2,314,952 + SMc01467 0.77 +0.1 2,314,952 + SMc01467 0.77 -0.3 2,314,952 + SMc01467 0.77 -0.1 2,314,952 + SMc01467 0.77 -1.0 2,314,952 + SMc01467 0.77 -1.7 2,314,953 - SMc01467 0.77 +0.1 2,315,089 + -0.3 2,315,089 + +0.1 2,315,089 + +0.8 2,315,089 + -0.4 2,315,090 - -0.7 2,315,131 + +0.1 2,315,346 + +0.5 2,315,405 - -2.4 2,315,722 + SMc01468 0.69 -1.5 2,315,723 - SMc01468 0.69 -0.4 2,316,193 + SMc01469 0.16 -0.2 2,316,193 + SMc01469 0.16 +0.3 2,316,193 + SMc01469 0.16 -0.3 2,316,193 + SMc01469 0.16 -0.6 2,316,325 + SMc01469 0.22 +0.6 2,316,325 + SMc01469 0.22 +0.8 2,316,326 - SMc01469 0.22 -0.0 2,316,326 - SMc01469 0.22 +0.5 2,316,443 - SMc01469 0.28 +0.6
Or see this region's nucleotide sequence