Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1198 and SMa1200 are separated by 64 nucleotides SMa1200 and SMa1201 are separated by 218 nucleotides SMa1201 and SMa1207 are separated by 236 nucleotides
SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453
SMa1198
SMa1200: SMa1200 - hypothetical protein, at 660,518 to 661,033
SMa1200
SMa1201: SMa1201 - hypothetical protein, at 661,252 to 661,632
SMa1201
SMa1207: SMa1207 - Crp family transcriptional regulator, at 661,869 to 662,549
SMa1207
Position (kb)
660
661
662 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 659.543 kb on - strand, within SMa1198 at 659.769 kb on + strand, within SMa1198 at 659.962 kb on + strand, within SMa1198 at 659.979 kb on - strand, within SMa1198 at 659.979 kb on - strand, within SMa1198 at 660.001 kb on + strand, within SMa1198 at 660.453 kb on + strand at 660.454 kb on - strand at 660.454 kb on - strand at 660.454 kb on - strand at 660.456 kb on + strand at 660.457 kb on - strand at 660.457 kb on - strand at 660.473 kb on - strand at 660.549 kb on - strand at 660.654 kb on + strand, within SMa1200 at 660.655 kb on - strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.656 kb on + strand, within SMa1200 at 660.942 kb on + strand, within SMa1200 at 660.943 kb on - strand, within SMa1200 at 660.943 kb on - strand, within SMa1200 at 661.144 kb on - strand at 661.144 kb on - strand at 661.167 kb on + strand at 661.167 kb on + strand at 661.208 kb on - strand at 661.222 kb on + strand at 661.223 kb on - strand at 661.313 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201 at 661.441 kb on - strand, within SMa1201 at 661.673 kb on - strand at 661.755 kb on - strand at 661.755 kb on - strand at 661.759 kb on + strand at 661.783 kb on + strand at 661.783 kb on + strand at 661.789 kb on + strand at 661.859 kb on + strand at 661.859 kb on + strand at 661.859 kb on + strand at 661.860 kb on - strand at 661.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 659,543 - SMa1198 0.44 -0.1 659,769 + SMa1198 0.58 -0.7 659,962 + SMa1198 0.70 -0.1 659,979 - SMa1198 0.71 +1.5 659,979 - SMa1198 0.71 -0.5 660,001 + SMa1198 0.72 -0.1 660,453 + +0.3 660,454 - +0.2 660,454 - +0.9 660,454 - +1.7 660,456 + +0.5 660,457 - +0.5 660,457 - +0.7 660,473 - +0.7 660,549 - -0.2 660,654 + SMa1200 0.26 +1.8 660,655 - SMa1200 0.27 +0.1 660,656 + SMa1200 0.27 -0.3 660,656 + SMa1200 0.27 +1.0 660,656 + SMa1200 0.27 -0.5 660,942 + SMa1200 0.82 +0.7 660,943 - SMa1200 0.82 +1.7 660,943 - SMa1200 0.82 +0.4 661,144 - -0.3 661,144 - +0.2 661,167 + +1.8 661,167 + +0.4 661,208 - +0.0 661,222 + -0.3 661,223 - +1.6 661,313 - SMa1201 0.16 -0.3 661,441 - SMa1201 0.50 -1.9 661,441 - SMa1201 0.50 -1.3 661,441 - SMa1201 0.50 -0.3 661,673 - -0.3 661,755 - +0.2 661,755 - +0.0 661,759 + -0.5 661,783 + +0.0 661,783 + +0.0 661,789 + -0.2 661,859 + +0.3 661,859 + -0.1 661,859 + -0.6 661,860 - -0.2 661,860 - +0.4
Or see this region's nucleotide sequence