Strain Fitness in Sinorhizobium meliloti 1021 around SMa1200

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa1198 and SMa1200 are separated by 64 nucleotidesSMa1200 and SMa1201 are separated by 218 nucleotidesSMa1201 and SMa1207 are separated by 236 nucleotides SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453 SMa1198 SMa1200: SMa1200 - hypothetical protein, at 660,518 to 661,033 SMa1200 SMa1201: SMa1201 - hypothetical protein, at 661,252 to 661,632 SMa1201 SMa1207: SMa1207 - Crp family transcriptional regulator, at 661,869 to 662,549 SMa1207 Position (kb) 660 661 662Strain fitness (log2 ratio) -2 -1 0 1 2at 659.543 kb on - strand, within SMa1198at 659.769 kb on + strand, within SMa1198at 659.962 kb on + strand, within SMa1198at 659.979 kb on - strand, within SMa1198at 659.979 kb on - strand, within SMa1198at 660.001 kb on + strand, within SMa1198at 660.453 kb on + strandat 660.454 kb on - strandat 660.454 kb on - strandat 660.454 kb on - strandat 660.456 kb on + strandat 660.457 kb on - strandat 660.457 kb on - strandat 660.473 kb on - strandat 660.549 kb on - strandat 660.654 kb on + strand, within SMa1200at 660.655 kb on - strand, within SMa1200at 660.656 kb on + strand, within SMa1200at 660.656 kb on + strand, within SMa1200at 660.656 kb on + strand, within SMa1200at 660.942 kb on + strand, within SMa1200at 660.943 kb on - strand, within SMa1200at 660.943 kb on - strand, within SMa1200at 661.144 kb on - strandat 661.144 kb on - strandat 661.167 kb on + strandat 661.167 kb on + strandat 661.208 kb on - strandat 661.222 kb on + strandat 661.223 kb on - strandat 661.313 kb on - strand, within SMa1201at 661.441 kb on - strand, within SMa1201at 661.441 kb on - strand, within SMa1201at 661.441 kb on - strand, within SMa1201at 661.673 kb on - strandat 661.755 kb on - strandat 661.755 kb on - strandat 661.759 kb on + strandat 661.783 kb on + strandat 661.783 kb on + strandat 661.789 kb on + strandat 661.859 kb on + strandat 661.859 kb on + strandat 661.859 kb on + strandat 661.860 kb on - strandat 661.860 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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659,543 - SMa1198 0.44 -0.1
659,769 + SMa1198 0.58 -0.7
659,962 + SMa1198 0.70 -0.1
659,979 - SMa1198 0.71 +1.5
659,979 - SMa1198 0.71 -0.5
660,001 + SMa1198 0.72 -0.1
660,453 + +0.3
660,454 - +0.2
660,454 - +0.9
660,454 - +1.7
660,456 + +0.5
660,457 - +0.5
660,457 - +0.7
660,473 - +0.7
660,549 - -0.2
660,654 + SMa1200 0.26 +1.8
660,655 - SMa1200 0.27 +0.1
660,656 + SMa1200 0.27 -0.3
660,656 + SMa1200 0.27 +1.0
660,656 + SMa1200 0.27 -0.5
660,942 + SMa1200 0.82 +0.7
660,943 - SMa1200 0.82 +1.7
660,943 - SMa1200 0.82 +0.4
661,144 - -0.3
661,144 - +0.2
661,167 + +1.8
661,167 + +0.4
661,208 - +0.0
661,222 + -0.3
661,223 - +1.6
661,313 - SMa1201 0.16 -0.3
661,441 - SMa1201 0.50 -1.9
661,441 - SMa1201 0.50 -1.3
661,441 - SMa1201 0.50 -0.3
661,673 - -0.3
661,755 - +0.2
661,755 - +0.0
661,759 + -0.5
661,783 + +0.0
661,783 + +0.0
661,789 + -0.2
661,859 + +0.3
661,859 + -0.1
661,859 + -0.6
661,860 - -0.2
661,860 - +0.4

Or see this region's nucleotide sequence