Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21532

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21531 and SM_b21532 overlap by 1 nucleotidesSM_b21532 and SM_b21533 are separated by 142 nucleotides SM_b21531: SM_b21531 - hypothetical protein, at 1,057,500 to 1,058,537 _b21531 SM_b21532: SM_b21532 - phosphate acetyltransferase, at 1,058,537 to 1,059,529 _b21532 SM_b21533: SM_b21533 - GntR family transcriptional regulator, at 1,059,672 to 1,060,457 _b21533 Position (kb) 1058 1059 1060Strain fitness (log2 ratio) -2 -1 0 1 2at 1057.560 kb on + strandat 1057.560 kb on + strandat 1057.560 kb on + strandat 1057.560 kb on + strandat 1057.561 kb on - strandat 1057.561 kb on - strandat 1057.561 kb on - strandat 1057.771 kb on + strand, within SM_b21531at 1057.771 kb on + strand, within SM_b21531at 1057.771 kb on + strand, within SM_b21531at 1057.772 kb on - strand, within SM_b21531at 1058.055 kb on + strand, within SM_b21531at 1058.056 kb on - strand, within SM_b21531at 1058.517 kb on + strandat 1058.518 kb on - strandat 1058.665 kb on + strand, within SM_b21532at 1058.765 kb on - strand, within SM_b21532at 1058.787 kb on - strand, within SM_b21532at 1058.787 kb on - strand, within SM_b21532at 1059.119 kb on + strand, within SM_b21532at 1059.119 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.250 kb on + strand, within SM_b21532at 1059.376 kb on + strand, within SM_b21532at 1059.496 kb on + strandat 1059.496 kb on + strandat 1059.497 kb on - strandat 1059.777 kb on + strand, within SM_b21533at 1059.777 kb on + strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1059.778 kb on - strand, within SM_b21533at 1060.066 kb on + strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.067 kb on - strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.106 kb on + strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.107 kb on - strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.299 kb on + strand, within SM_b21533at 1060.319 kb on + strand, within SM_b21533at 1060.504 kb on + strandat 1060.504 kb on + strandat 1060.505 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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1,057,560 + -0.3
1,057,560 + +0.0
1,057,560 + +0.4
1,057,560 + +0.5
1,057,561 - -0.2
1,057,561 - -0.2
1,057,561 - +0.1
1,057,771 + SM_b21531 0.26 -0.3
1,057,771 + SM_b21531 0.26 -1.0
1,057,771 + SM_b21531 0.26 -0.4
1,057,772 - SM_b21531 0.26 -0.4
1,058,055 + SM_b21531 0.53 -1.1
1,058,056 - SM_b21531 0.54 -0.7
1,058,517 + -0.1
1,058,518 - +0.5
1,058,665 + SM_b21532 0.13 +0.3
1,058,765 - SM_b21532 0.23 +1.6
1,058,787 - SM_b21532 0.25 +1.6
1,058,787 - SM_b21532 0.25 -0.0
1,059,119 + SM_b21532 0.59 +0.2
1,059,119 + SM_b21532 0.59 -0.3
1,059,250 + SM_b21532 0.72 -0.6
1,059,250 + SM_b21532 0.72 -0.1
1,059,250 + SM_b21532 0.72 +0.2
1,059,250 + SM_b21532 0.72 -0.1
1,059,376 + SM_b21532 0.84 -0.5
1,059,496 + -0.0
1,059,496 + +0.6
1,059,497 - +0.2
1,059,777 + SM_b21533 0.13 -1.6
1,059,777 + SM_b21533 0.13 -0.5
1,059,778 - SM_b21533 0.13 +2.0
1,059,778 - SM_b21533 0.13 +0.6
1,059,778 - SM_b21533 0.13 +0.0
1,060,066 + SM_b21533 0.50 +0.3
1,060,067 - SM_b21533 0.50 -0.2
1,060,067 - SM_b21533 0.50 +0.1
1,060,067 - SM_b21533 0.50 +0.5
1,060,067 - SM_b21533 0.50 -0.4
1,060,106 + SM_b21533 0.55 +1.3
1,060,106 + SM_b21533 0.55 +0.6
1,060,106 + SM_b21533 0.55 -0.6
1,060,107 - SM_b21533 0.55 +1.0
1,060,107 - SM_b21533 0.55 +1.0
1,060,107 - SM_b21533 0.55 +0.1
1,060,299 + SM_b21533 0.80 -1.8
1,060,299 + SM_b21533 0.80 +0.2
1,060,299 + SM_b21533 0.80 -0.9
1,060,319 + SM_b21533 0.82 -0.0
1,060,504 + +0.5
1,060,504 + +0.3
1,060,505 - -0.3

Or see this region's nucleotide sequence