Experiment: LB, 23C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21531 and SM_b21532 overlap by 1 nucleotides SM_b21532 and SM_b21533 are separated by 142 nucleotides
SM_b21531: SM_b21531 - hypothetical protein, at 1,057,500 to 1,058,537
_b21531
SM_b21532: SM_b21532 - phosphate acetyltransferase, at 1,058,537 to 1,059,529
_b21532
SM_b21533: SM_b21533 - GntR family transcriptional regulator, at 1,059,672 to 1,060,457
_b21533
Position (kb)
1058
1059
1060 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.560 kb on + strand at 1057.561 kb on - strand at 1057.561 kb on - strand at 1057.561 kb on - strand at 1057.771 kb on + strand, within SM_b21531 at 1057.771 kb on + strand, within SM_b21531 at 1057.771 kb on + strand, within SM_b21531 at 1057.772 kb on - strand, within SM_b21531 at 1058.055 kb on + strand, within SM_b21531 at 1058.056 kb on - strand, within SM_b21531 at 1058.517 kb on + strand at 1058.518 kb on - strand at 1058.665 kb on + strand, within SM_b21532 at 1058.765 kb on - strand, within SM_b21532 at 1058.787 kb on - strand, within SM_b21532 at 1058.787 kb on - strand, within SM_b21532 at 1059.119 kb on + strand, within SM_b21532 at 1059.119 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.250 kb on + strand, within SM_b21532 at 1059.376 kb on + strand, within SM_b21532 at 1059.496 kb on + strand at 1059.496 kb on + strand at 1059.497 kb on - strand at 1059.777 kb on + strand, within SM_b21533 at 1059.777 kb on + strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1059.778 kb on - strand, within SM_b21533 at 1060.066 kb on + strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.067 kb on - strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.106 kb on + strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.107 kb on - strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.299 kb on + strand, within SM_b21533 at 1060.319 kb on + strand, within SM_b21533 at 1060.504 kb on + strand at 1060.504 kb on + strand at 1060.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 23C remove 1,057,560 + -0.3 1,057,560 + +0.0 1,057,560 + +0.4 1,057,560 + +0.5 1,057,561 - -0.2 1,057,561 - -0.2 1,057,561 - +0.1 1,057,771 + SM_b21531 0.26 -0.3 1,057,771 + SM_b21531 0.26 -1.0 1,057,771 + SM_b21531 0.26 -0.4 1,057,772 - SM_b21531 0.26 -0.4 1,058,055 + SM_b21531 0.53 -1.1 1,058,056 - SM_b21531 0.54 -0.7 1,058,517 + -0.1 1,058,518 - +0.5 1,058,665 + SM_b21532 0.13 +0.3 1,058,765 - SM_b21532 0.23 +1.6 1,058,787 - SM_b21532 0.25 +1.6 1,058,787 - SM_b21532 0.25 -0.0 1,059,119 + SM_b21532 0.59 +0.2 1,059,119 + SM_b21532 0.59 -0.3 1,059,250 + SM_b21532 0.72 -0.6 1,059,250 + SM_b21532 0.72 -0.1 1,059,250 + SM_b21532 0.72 +0.2 1,059,250 + SM_b21532 0.72 -0.1 1,059,376 + SM_b21532 0.84 -0.5 1,059,496 + -0.0 1,059,496 + +0.6 1,059,497 - +0.2 1,059,777 + SM_b21533 0.13 -1.6 1,059,777 + SM_b21533 0.13 -0.5 1,059,778 - SM_b21533 0.13 +2.0 1,059,778 - SM_b21533 0.13 +0.6 1,059,778 - SM_b21533 0.13 +0.0 1,060,066 + SM_b21533 0.50 +0.3 1,060,067 - SM_b21533 0.50 -0.2 1,060,067 - SM_b21533 0.50 +0.1 1,060,067 - SM_b21533 0.50 +0.5 1,060,067 - SM_b21533 0.50 -0.4 1,060,106 + SM_b21533 0.55 +1.3 1,060,106 + SM_b21533 0.55 +0.6 1,060,106 + SM_b21533 0.55 -0.6 1,060,107 - SM_b21533 0.55 +1.0 1,060,107 - SM_b21533 0.55 +1.0 1,060,107 - SM_b21533 0.55 +0.1 1,060,299 + SM_b21533 0.80 -1.8 1,060,299 + SM_b21533 0.80 +0.2 1,060,299 + SM_b21533 0.80 -0.9 1,060,319 + SM_b21533 0.82 -0.0 1,060,504 + +0.5 1,060,504 + +0.3 1,060,505 - -0.3
Or see this region's nucleotide sequence