Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20357

Experiment: LB, 23C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20356 and SM_b20357 are separated by 24 nucleotidesSM_b20357 and SM_b20358 are separated by 8 nucleotides SM_b20356: SM_b20356 - sensory histidine kinase, at 364,660 to 367,413 _b20356 SM_b20357: SM_b20357 - histidine kinase, at 367,438 to 367,803 _b20357 SM_b20358: SM_b20358 - regulatory protein, at 367,812 to 369,374 _b20358 Position (kb) 367 368Strain fitness (log2 ratio) -2 -1 0 1at 366.503 kb on + strand, within SM_b20356at 366.503 kb on + strand, within SM_b20356at 366.504 kb on - strand, within SM_b20356at 366.533 kb on + strandat 366.533 kb on + strand, within SM_b20356at 366.534 kb on - strand, within SM_b20356at 366.875 kb on + strand, within SM_b20356at 366.876 kb on - strand, within SM_b20356at 366.876 kb on - strand, within SM_b20356at 366.975 kb on + strandat 366.976 kb on - strand, within SM_b20356at 367.094 kb on + strand, within SM_b20356at 367.095 kb on - strand, within SM_b20356at 367.417 kb on + strandat 367.593 kb on + strand, within SM_b20357at 367.593 kb on + strand, within SM_b20357at 367.593 kb on + strand, within SM_b20357at 367.664 kb on + strand, within SM_b20357at 367.800 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.802 kb on - strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.946 kb on + strandat 367.947 kb on - strandat 367.947 kb on - strandat 367.947 kb on - strandat 367.948 kb on + strandat 368.104 kb on + strandat 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.104 kb on + strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.105 kb on - strand, within SM_b20358at 368.158 kb on + strand, within SM_b20358at 368.612 kb on - strand, within SM_b20358at 368.644 kb on - strand, within SM_b20358at 368.747 kb on - strand, within SM_b20358

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 23C
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366,503 + SM_b20356 0.67 +0.1
366,503 + SM_b20356 0.67 +0.4
366,504 - SM_b20356 0.67 -0.8
366,533 + +1.0
366,533 + SM_b20356 0.68 +0.2
366,534 - SM_b20356 0.68 +1.3
366,875 + SM_b20356 0.80 +0.3
366,876 - SM_b20356 0.80 +0.2
366,876 - SM_b20356 0.80 -0.3
366,975 + -0.9
366,976 - SM_b20356 0.84 -0.5
367,094 + SM_b20356 0.88 +0.1
367,095 - SM_b20356 0.88 -0.4
367,417 + +0.7
367,593 + SM_b20357 0.42 -1.9
367,593 + SM_b20357 0.42 -1.1
367,593 + SM_b20357 0.42 +0.0
367,664 + SM_b20357 0.62 -1.2
367,800 - +0.5
367,802 - +0.1
367,802 - +0.7
367,802 - -0.2
367,802 - -0.5
367,946 + -0.3
367,946 + -1.6
367,946 + -0.6
367,946 + +1.0
367,947 - +0.5
367,947 - -0.1
367,947 - -0.6
367,948 + -0.3
368,104 + -0.6
368,104 + SM_b20358 0.19 +0.4
368,104 + SM_b20358 0.19 -0.8
368,104 + SM_b20358 0.19 -1.4
368,104 + SM_b20358 0.19 +0.2
368,104 + SM_b20358 0.19 +0.4
368,105 - SM_b20358 0.19 +0.7
368,105 - SM_b20358 0.19 +1.1
368,105 - SM_b20358 0.19 +1.1
368,105 - SM_b20358 0.19 -0.3
368,105 - SM_b20358 0.19 +0.3
368,105 - SM_b20358 0.19 -0.1
368,105 - SM_b20358 0.19 -0.2
368,105 - SM_b20358 0.19 -0.0
368,105 - SM_b20358 0.19 -1.2
368,158 + SM_b20358 0.22 +0.0
368,612 - SM_b20358 0.51 -0.7
368,644 - SM_b20358 0.53 +1.0
368,747 - SM_b20358 0.60 -0.3

Or see this region's nucleotide sequence