Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24105

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24100 and RR42_RS24105 are separated by 384 nucleotidesRR42_RS24105 and RR42_RS24110 are separated by 608 nucleotides RR42_RS24100: RR42_RS24100 - hypothetical protein, at 731,001 to 731,516 _RS24100 RR42_RS24105: RR42_RS24105 - membrane protein, at 731,901 to 733,004 _RS24105 RR42_RS24110: RR42_RS24110 - C4-dicarboxylate ABC transporter permease, at 733,613 to 734,929 _RS24110 Position (kb) 731 732 733 734Strain fitness (log2 ratio) -3 -2 -1 0 1at 730.906 kb on - strandat 730.906 kb on - strandat 731.137 kb on + strand, within RR42_RS24100at 731.220 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.232 kb on + strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.233 kb on - strand, within RR42_RS24100at 731.330 kb on + strand, within RR42_RS24100at 731.331 kb on - strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.352 kb on + strand, within RR42_RS24100at 731.458 kb on + strand, within RR42_RS24100at 731.512 kb on + strandat 731.512 kb on + strandat 731.513 kb on - strandat 731.513 kb on - strandat 731.513 kb on - strandat 731.544 kb on - strandat 731.544 kb on - strandat 731.552 kb on + strandat 731.553 kb on - strandat 731.553 kb on - strandat 731.568 kb on + strandat 731.568 kb on + strandat 731.569 kb on - strandat 731.630 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.647 kb on - strandat 731.895 kb on + strandat 731.895 kb on + strandat 731.895 kb on + strandat 731.896 kb on - strandat 731.896 kb on - strandat 731.896 kb on - strandat 731.902 kb on + strandat 731.903 kb on - strandat 731.903 kb on - strandat 732.017 kb on - strand, within RR42_RS24105at 732.017 kb on - strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.058 kb on + strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.059 kb on - strand, within RR42_RS24105at 732.137 kb on + strand, within RR42_RS24105at 732.152 kb on + strand, within RR42_RS24105at 732.152 kb on + strand, within RR42_RS24105at 732.173 kb on + strand, within RR42_RS24105at 732.173 kb on - strand, within RR42_RS24105at 732.173 kb on - strand, within RR42_RS24105at 732.175 kb on + strand, within RR42_RS24105at 732.176 kb on - strand, within RR42_RS24105at 732.259 kb on + strand, within RR42_RS24105at 732.288 kb on + strand, within RR42_RS24105at 732.343 kb on + strand, within RR42_RS24105at 732.344 kb on - strand, within RR42_RS24105at 732.356 kb on + strand, within RR42_RS24105at 732.371 kb on + strand, within RR42_RS24105at 732.371 kb on + strand, within RR42_RS24105at 732.372 kb on - strand, within RR42_RS24105at 732.372 kb on - strand, within RR42_RS24105at 732.376 kb on + strand, within RR42_RS24105at 732.377 kb on - strand, within RR42_RS24105at 732.384 kb on + strand, within RR42_RS24105at 732.384 kb on + strand, within RR42_RS24105at 732.385 kb on - strand, within RR42_RS24105at 732.388 kb on - strand, within RR42_RS24105at 732.490 kb on + strand, within RR42_RS24105at 732.490 kb on + strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.491 kb on - strand, within RR42_RS24105at 732.494 kb on + strand, within RR42_RS24105at 732.529 kb on + strand, within RR42_RS24105at 732.565 kb on + strand, within RR42_RS24105at 732.565 kb on + strand, within RR42_RS24105at 732.565 kb on + strand, within RR42_RS24105at 732.565 kb on + strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.566 kb on - strand, within RR42_RS24105at 732.643 kb on + strand, within RR42_RS24105at 732.643 kb on + strand, within RR42_RS24105at 732.644 kb on - strand, within RR42_RS24105at 732.644 kb on - strand, within RR42_RS24105at 732.644 kb on - strand, within RR42_RS24105at 732.680 kb on + strand, within RR42_RS24105at 732.894 kb on + strandat 733.048 kb on + strandat 733.121 kb on + strandat 733.122 kb on - strandat 733.161 kb on + strandat 733.172 kb on + strandat 733.172 kb on + strandat 733.172 kb on + strandat 733.192 kb on + strandat 733.291 kb on - strandat 733.291 kb on - strandat 733.318 kb on + strandat 733.318 kb on + strandat 733.319 kb on - strandat 733.372 kb on + strandat 733.372 kb on + strandat 733.372 kb on + strandat 733.373 kb on - strandat 733.373 kb on - strandat 733.376 kb on + strandat 733.377 kb on - strandat 733.389 kb on - strandat 733.389 kb on - strandat 733.391 kb on + strandat 733.454 kb on - strandat 733.457 kb on - strandat 733.516 kb on - strandat 733.632 kb on - strandat 733.694 kb on - strandat 733.695 kb on + strandat 733.695 kb on + strandat 733.695 kb on + strandat 733.695 kb on + strandat 733.715 kb on + strandat 733.716 kb on - strandat 733.716 kb on - strandat 733.716 kb on - strandat 733.763 kb on + strand, within RR42_RS24110at 733.764 kb on - strand, within RR42_RS24110at 733.847 kb on + strand, within RR42_RS24110at 733.847 kb on + strand, within RR42_RS24110at 733.848 kb on - strand, within RR42_RS24110at 733.848 kb on - strand, within RR42_RS24110at 733.848 kb on - strand, within RR42_RS24110at 733.848 kb on - strand, within RR42_RS24110

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
730,906 - +0.9
730,906 - +0.3
731,137 + RR42_RS24100 0.26 +0.3
731,220 + RR42_RS24100 0.42 +0.2
731,232 + RR42_RS24100 0.45 +1.0
731,232 + RR42_RS24100 0.45 +0.4
731,233 - RR42_RS24100 0.45 -1.0
731,233 - RR42_RS24100 0.45 -0.7
731,330 + RR42_RS24100 0.64 -0.1
731,331 - RR42_RS24100 0.64 -0.1
731,352 + RR42_RS24100 0.68 +0.5
731,352 + RR42_RS24100 0.68 +0.1
731,352 + RR42_RS24100 0.68 +0.1
731,458 + RR42_RS24100 0.89 +0.3
731,512 + +0.0
731,512 + +0.4
731,513 - -0.3
731,513 - -0.0
731,513 - +0.3
731,544 - -1.7
731,544 - +0.8
731,552 + +0.9
731,553 - +1.4
731,553 - +0.2
731,568 + -0.6
731,568 + +0.2
731,569 - +1.1
731,630 - +0.7
731,647 - -0.2
731,647 - -1.6
731,647 - -0.9
731,647 - +0.1
731,895 + -0.3
731,895 + -0.1
731,895 + +0.9
731,896 - -0.0
731,896 - -0.9
731,896 - -1.6
731,902 + -1.1
731,903 - -1.6
731,903 - -0.5
732,017 - RR42_RS24105 0.11 -0.6
732,017 - RR42_RS24105 0.11 +1.5
732,058 + RR42_RS24105 0.14 -0.6
732,058 + RR42_RS24105 0.14 -0.5
732,058 + RR42_RS24105 0.14 +0.8
732,059 - RR42_RS24105 0.14 +0.8
732,059 - RR42_RS24105 0.14 +0.3
732,059 - RR42_RS24105 0.14 -0.1
732,059 - RR42_RS24105 0.14 +0.1
732,059 - RR42_RS24105 0.14 -0.5
732,059 - RR42_RS24105 0.14 +0.1
732,059 - RR42_RS24105 0.14 -0.8
732,137 + RR42_RS24105 0.21 +0.8
732,152 + RR42_RS24105 0.23 -0.4
732,152 + RR42_RS24105 0.23 +0.1
732,173 + RR42_RS24105 0.25 -0.3
732,173 - RR42_RS24105 0.25 -0.1
732,173 - RR42_RS24105 0.25 +0.0
732,175 + RR42_RS24105 0.25 +0.3
732,176 - RR42_RS24105 0.25 +0.3
732,259 + RR42_RS24105 0.32 +0.5
732,288 + RR42_RS24105 0.35 -0.7
732,343 + RR42_RS24105 0.40 -2.9
732,344 - RR42_RS24105 0.40 -0.5
732,356 + RR42_RS24105 0.41 -0.5
732,371 + RR42_RS24105 0.43 -0.0
732,371 + RR42_RS24105 0.43 +0.2
732,372 - RR42_RS24105 0.43 -1.3
732,372 - RR42_RS24105 0.43 -0.5
732,376 + RR42_RS24105 0.43 -1.8
732,377 - RR42_RS24105 0.43 +0.5
732,384 + RR42_RS24105 0.44 -0.8
732,384 + RR42_RS24105 0.44 -0.8
732,385 - RR42_RS24105 0.44 -0.0
732,388 - RR42_RS24105 0.44 -0.3
732,490 + RR42_RS24105 0.53 -1.2
732,490 + RR42_RS24105 0.53 -0.2
732,491 - RR42_RS24105 0.53 -1.4
732,491 - RR42_RS24105 0.53 -0.0
732,491 - RR42_RS24105 0.53 -1.0
732,491 - RR42_RS24105 0.53 +0.8
732,494 + RR42_RS24105 0.54 +0.6
732,529 + RR42_RS24105 0.57 +0.1
732,565 + RR42_RS24105 0.60 -0.3
732,565 + RR42_RS24105 0.60 -0.0
732,565 + RR42_RS24105 0.60 -0.3
732,565 + RR42_RS24105 0.60 +0.8
732,566 - RR42_RS24105 0.60 +0.6
732,566 - RR42_RS24105 0.60 +0.3
732,566 - RR42_RS24105 0.60 +0.5
732,566 - RR42_RS24105 0.60 +0.6
732,566 - RR42_RS24105 0.60 +0.5
732,566 - RR42_RS24105 0.60 -0.1
732,643 + RR42_RS24105 0.67 +0.5
732,643 + RR42_RS24105 0.67 -0.4
732,644 - RR42_RS24105 0.67 -1.0
732,644 - RR42_RS24105 0.67 -0.4
732,644 - RR42_RS24105 0.67 -1.7
732,680 + RR42_RS24105 0.71 -0.5
732,894 + -1.1
733,048 + -0.6
733,121 + -0.5
733,122 - +0.3
733,161 + -0.6
733,172 + -0.9
733,172 + +0.6
733,172 + -0.2
733,192 + -1.3
733,291 - +1.2
733,291 - -0.3
733,318 + -0.8
733,318 + -0.2
733,319 - +0.1
733,372 + -2.0
733,372 + -0.3
733,372 + -0.1
733,373 - -0.4
733,373 - +0.3
733,376 + +0.5
733,377 - -0.7
733,389 - -0.1
733,389 - -0.1
733,391 + -2.5
733,454 - +0.2
733,457 - -0.0
733,516 - -0.8
733,632 - -0.1
733,694 - -0.0
733,695 + -0.5
733,695 + +0.3
733,695 + -1.2
733,695 + +0.8
733,715 + +0.3
733,716 - -1.0
733,716 - +0.0
733,716 - -0.6
733,763 + RR42_RS24110 0.11 -0.0
733,764 - RR42_RS24110 0.11 +1.0
733,847 + RR42_RS24110 0.18 +0.5
733,847 + RR42_RS24110 0.18 +1.0
733,848 - RR42_RS24110 0.18 -0.1
733,848 - RR42_RS24110 0.18 +0.1
733,848 - RR42_RS24110 0.18 -0.4
733,848 - RR42_RS24110 0.18 -0.2

Or see this region's nucleotide sequence