Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS21340 and RR42_RS21345 are separated by 192 nucleotides RR42_RS21345 and RR42_RS21350 are separated by 119 nucleotides
RR42_RS21340: RR42_RS21340 - DNA-binding protein, at 115,501 to 117,084
_RS21340
RR42_RS21345: RR42_RS21345 - acetylornithine deacetylase, at 117,277 to 118,626
_RS21345
RR42_RS21350: RR42_RS21350 - peptide ABC transporter substrate-binding protein, at 118,746 to 120,308
_RS21350
Position (kb) 117
118
119 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 116.379 kb on - strand, within RR42_RS21340 at 116.379 kb on - strand, within RR42_RS21340 at 116.544 kb on - strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.561 kb on + strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.562 kb on - strand, within RR42_RS21340 at 116.802 kb on + strand, within RR42_RS21340 at 116.803 kb on - strand, within RR42_RS21340 at 116.858 kb on + strand, within RR42_RS21340 at 116.915 kb on - strand, within RR42_RS21340 at 116.999 kb on + strand at 117.000 kb on - strand at 117.132 kb on + strand at 117.132 kb on + strand at 117.136 kb on + strand at 117.136 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.276 kb on + strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.277 kb on - strand at 117.295 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.304 kb on - strand at 117.313 kb on - strand at 117.376 kb on + strand at 117.376 kb on + strand at 117.387 kb on + strand at 117.496 kb on + strand, within RR42_RS21345 at 117.565 kb on + strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.566 kb on - strand, within RR42_RS21345 at 117.679 kb on + strand, within RR42_RS21345 at 117.764 kb on - strand, within RR42_RS21345 at 117.765 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.015 kb on + strand, within RR42_RS21345 at 118.016 kb on - strand, within RR42_RS21345 at 118.327 kb on + strand, within RR42_RS21345 at 118.608 kb on - strand at 118.608 kb on - strand at 118.899 kb on + strand at 119.004 kb on + strand, within RR42_RS21350 at 119.004 kb on + strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.005 kb on - strand, within RR42_RS21350 at 119.006 kb on + strand, within RR42_RS21350 at 119.133 kb on + strand, within RR42_RS21350 at 119.133 kb on + strand, within RR42_RS21350 at 119.134 kb on - strand, within RR42_RS21350 at 119.134 kb on - strand, within RR42_RS21350 at 119.254 kb on - strand, within RR42_RS21350 at 119.344 kb on - strand, within RR42_RS21350 at 119.345 kb on + strand, within RR42_RS21350 at 119.413 kb on - strand, within RR42_RS21350 at 119.413 kb on - strand, within RR42_RS21350
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 116,379 - RR42_RS21340 0.55 +1.0 116,379 - RR42_RS21340 0.55 +0.1 116,544 - RR42_RS21340 0.66 -0.4 116,561 + RR42_RS21340 0.67 +0.3 116,561 + RR42_RS21340 0.67 -0.7 116,561 + RR42_RS21340 0.67 +1.0 116,561 + RR42_RS21340 0.67 -0.8 116,562 - RR42_RS21340 0.67 +0.0 116,562 - RR42_RS21340 0.67 -0.2 116,802 + RR42_RS21340 0.82 -0.5 116,803 - RR42_RS21340 0.82 -1.7 116,858 + RR42_RS21340 0.86 -0.6 116,915 - RR42_RS21340 0.89 +0.8 116,999 + -0.1 117,000 - -0.7 117,132 + +0.2 117,132 + +0.0 117,136 + -0.1 117,136 + -1.5 117,276 + -3.0 117,276 + -0.4 117,276 + +0.4 117,277 - +0.9 117,277 - -0.1 117,277 - +0.2 117,277 - +0.1 117,295 - -0.1 117,304 - +0.3 117,304 - +0.4 117,304 - -1.0 117,313 - -1.0 117,376 + +0.9 117,376 + +0.8 117,387 + -0.5 117,496 + RR42_RS21345 0.16 +1.1 117,565 + RR42_RS21345 0.21 +0.1 117,566 - RR42_RS21345 0.21 +0.2 117,566 - RR42_RS21345 0.21 +1.2 117,566 - RR42_RS21345 0.21 +0.4 117,679 + RR42_RS21345 0.30 +0.1 117,764 - RR42_RS21345 0.36 -0.3 117,765 + RR42_RS21345 0.36 +0.5 118,015 + RR42_RS21345 0.55 -0.7 118,015 + RR42_RS21345 0.55 +0.9 118,015 + RR42_RS21345 0.55 +0.2 118,016 - RR42_RS21345 0.55 +0.3 118,327 + RR42_RS21345 0.78 +0.6 118,608 - +1.0 118,608 - -0.2 118,899 + +0.8 119,004 + RR42_RS21350 0.17 -0.8 119,004 + RR42_RS21350 0.17 +0.4 119,005 - RR42_RS21350 0.17 -2.1 119,005 - RR42_RS21350 0.17 -1.2 119,005 - RR42_RS21350 0.17 -1.5 119,006 + RR42_RS21350 0.17 -0.5 119,133 + RR42_RS21350 0.25 -0.6 119,133 + RR42_RS21350 0.25 +0.7 119,134 - RR42_RS21350 0.25 -1.4 119,134 - RR42_RS21350 0.25 -1.0 119,254 - RR42_RS21350 0.33 +0.2 119,344 - RR42_RS21350 0.38 -0.1 119,345 + RR42_RS21350 0.38 +1.3 119,413 - RR42_RS21350 0.43 +0.4 119,413 - RR42_RS21350 0.43 -0.3
Or see this region's nucleotide sequence