Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19465

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19460 and RR42_RS19465 are separated by 81 nucleotidesRR42_RS19465 and RR42_RS19470 are separated by 399 nucleotides RR42_RS19460: RR42_RS19460 - GCN5 family acetyltransferase, at 4,203,891 to 4,204,589 _RS19460 RR42_RS19465: RR42_RS19465 - AsnC family transcriptional regulator, at 4,204,671 to 4,205,162 _RS19465 RR42_RS19470: RR42_RS19470 - hypothetical protein, at 4,205,562 to 4,206,134 _RS19470 Position (kb) 4204 4205 4206Strain fitness (log2 ratio) -1 0 1 2at 4203.686 kb on + strandat 4203.686 kb on + strandat 4203.687 kb on - strandat 4203.697 kb on - strandat 4203.742 kb on + strandat 4203.742 kb on + strandat 4203.743 kb on - strandat 4203.743 kb on - strandat 4203.764 kb on + strandat 4203.807 kb on - strandat 4203.807 kb on - strandat 4203.807 kb on - strandat 4203.855 kb on + strandat 4203.855 kb on + strandat 4203.856 kb on - strandat 4203.856 kb on - strandat 4203.861 kb on + strandat 4203.861 kb on + strandat 4203.871 kb on + strandat 4203.871 kb on + strandat 4203.872 kb on - strandat 4203.872 kb on - strandat 4203.872 kb on - strandat 4204.110 kb on + strand, within RR42_RS19460at 4204.273 kb on + strand, within RR42_RS19460at 4204.274 kb on - strand, within RR42_RS19460at 4204.274 kb on - strand, within RR42_RS19460at 4204.335 kb on + strand, within RR42_RS19460at 4204.335 kb on + strand, within RR42_RS19460at 4204.336 kb on - strand, within RR42_RS19460at 4204.405 kb on - strand, within RR42_RS19460at 4204.405 kb on - strand, within RR42_RS19460at 4204.428 kb on + strand, within RR42_RS19460at 4204.429 kb on - strand, within RR42_RS19460at 4204.503 kb on + strand, within RR42_RS19460at 4204.503 kb on + strand, within RR42_RS19460at 4204.503 kb on + strand, within RR42_RS19460at 4204.503 kb on + strand, within RR42_RS19460at 4204.503 kb on + strand, within RR42_RS19460at 4204.504 kb on - strand, within RR42_RS19460at 4204.504 kb on - strand, within RR42_RS19460at 4204.504 kb on - strand, within RR42_RS19460at 4204.504 kb on - strand, within RR42_RS19460at 4204.734 kb on + strand, within RR42_RS19465at 4204.735 kb on - strand, within RR42_RS19465at 4204.807 kb on + strand, within RR42_RS19465at 4204.807 kb on + strand, within RR42_RS19465at 4204.807 kb on + strand, within RR42_RS19465at 4204.807 kb on + strand, within RR42_RS19465at 4204.807 kb on + strand, within RR42_RS19465at 4204.808 kb on - strand, within RR42_RS19465at 4204.941 kb on + strand, within RR42_RS19465at 4204.941 kb on + strand, within RR42_RS19465at 4204.941 kb on + strand, within RR42_RS19465at 4204.941 kb on + strand, within RR42_RS19465at 4204.942 kb on - strand, within RR42_RS19465at 4204.942 kb on - strand, within RR42_RS19465at 4204.942 kb on - strand, within RR42_RS19465at 4204.942 kb on - strand, within RR42_RS19465at 4204.942 kb on - strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.949 kb on + strand, within RR42_RS19465at 4204.950 kb on - strand, within RR42_RS19465at 4204.950 kb on - strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.951 kb on + strand, within RR42_RS19465at 4204.952 kb on - strand, within RR42_RS19465at 4204.952 kb on - strand, within RR42_RS19465at 4204.952 kb on - strand, within RR42_RS19465at 4204.952 kb on - strand, within RR42_RS19465at 4204.952 kb on - strand, within RR42_RS19465at 4205.230 kb on + strandat 4205.231 kb on - strandat 4205.316 kb on + strandat 4205.714 kb on + strand, within RR42_RS19470at 4205.715 kb on - strand, within RR42_RS19470at 4205.849 kb on - strand, within RR42_RS19470at 4205.990 kb on + strand, within RR42_RS19470at 4205.990 kb on + strand, within RR42_RS19470at 4205.990 kb on + strand, within RR42_RS19470at 4205.990 kb on + strand, within RR42_RS19470

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,203,686 + +0.5
4,203,686 + -0.2
4,203,687 - -0.0
4,203,697 - -0.4
4,203,742 + -0.1
4,203,742 + +0.2
4,203,743 - +0.5
4,203,743 - -0.3
4,203,764 + -0.5
4,203,807 - -0.6
4,203,807 - +0.4
4,203,807 - +0.7
4,203,855 + -0.0
4,203,855 + -0.5
4,203,856 - -0.5
4,203,856 - +0.4
4,203,861 + -0.6
4,203,861 + +0.2
4,203,871 + -0.2
4,203,871 + +0.1
4,203,872 - +0.0
4,203,872 - -0.0
4,203,872 - +2.4
4,204,110 + RR42_RS19460 0.31 +0.5
4,204,273 + RR42_RS19460 0.55 -0.4
4,204,274 - RR42_RS19460 0.55 -0.6
4,204,274 - RR42_RS19460 0.55 +0.8
4,204,335 + RR42_RS19460 0.64 +0.5
4,204,335 + RR42_RS19460 0.64 +0.0
4,204,336 - RR42_RS19460 0.64 +1.4
4,204,405 - RR42_RS19460 0.74 +0.7
4,204,405 - RR42_RS19460 0.74 +0.3
4,204,428 + RR42_RS19460 0.77 +0.4
4,204,429 - RR42_RS19460 0.77 -0.3
4,204,503 + RR42_RS19460 0.88 -0.4
4,204,503 + RR42_RS19460 0.88 -1.4
4,204,503 + RR42_RS19460 0.88 -1.5
4,204,503 + RR42_RS19460 0.88 +0.5
4,204,503 + RR42_RS19460 0.88 -0.9
4,204,504 - RR42_RS19460 0.88 -0.0
4,204,504 - RR42_RS19460 0.88 -1.4
4,204,504 - RR42_RS19460 0.88 -1.2
4,204,504 - RR42_RS19460 0.88 -0.6
4,204,734 + RR42_RS19465 0.13 +0.3
4,204,735 - RR42_RS19465 0.13 -0.2
4,204,807 + RR42_RS19465 0.28 +1.4
4,204,807 + RR42_RS19465 0.28 -0.1
4,204,807 + RR42_RS19465 0.28 -0.4
4,204,807 + RR42_RS19465 0.28 +0.2
4,204,807 + RR42_RS19465 0.28 -1.3
4,204,808 - RR42_RS19465 0.28 +0.4
4,204,941 + RR42_RS19465 0.55 +0.0
4,204,941 + RR42_RS19465 0.55 +0.3
4,204,941 + RR42_RS19465 0.55 +0.5
4,204,941 + RR42_RS19465 0.55 -1.4
4,204,942 - RR42_RS19465 0.55 -0.8
4,204,942 - RR42_RS19465 0.55 +0.4
4,204,942 - RR42_RS19465 0.55 -0.4
4,204,942 - RR42_RS19465 0.55 +1.2
4,204,942 - RR42_RS19465 0.55 +0.8
4,204,949 + RR42_RS19465 0.57 +0.2
4,204,949 + RR42_RS19465 0.57 +0.5
4,204,949 + RR42_RS19465 0.57 +0.7
4,204,949 + RR42_RS19465 0.57 +0.7
4,204,949 + RR42_RS19465 0.57 +0.0
4,204,949 + RR42_RS19465 0.57 -1.2
4,204,950 - RR42_RS19465 0.57 +0.0
4,204,950 - RR42_RS19465 0.57 +1.7
4,204,951 + RR42_RS19465 0.57 +0.9
4,204,951 + RR42_RS19465 0.57 +0.2
4,204,951 + RR42_RS19465 0.57 -0.7
4,204,951 + RR42_RS19465 0.57 +1.0
4,204,951 + RR42_RS19465 0.57 +0.1
4,204,951 + RR42_RS19465 0.57 -0.2
4,204,952 - RR42_RS19465 0.57 +0.0
4,204,952 - RR42_RS19465 0.57 +0.8
4,204,952 - RR42_RS19465 0.57 +1.1
4,204,952 - RR42_RS19465 0.57 +0.6
4,204,952 - RR42_RS19465 0.57 +0.4
4,205,230 + -1.0
4,205,231 - -0.1
4,205,316 + +0.0
4,205,714 + RR42_RS19470 0.27 -1.6
4,205,715 - RR42_RS19470 0.27 -1.1
4,205,849 - RR42_RS19470 0.50 -0.1
4,205,990 + RR42_RS19470 0.75 -0.5
4,205,990 + RR42_RS19470 0.75 -0.0
4,205,990 + RR42_RS19470 0.75 -0.2
4,205,990 + RR42_RS19470 0.75 -0.2

Or see this region's nucleotide sequence