Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS19300 and RR42_RS19305 are separated by 226 nucleotides RR42_RS19305 and RR42_RS19310 are separated by 355 nucleotides RR42_RS19310 and RR42_RS19315 are separated by 291 nucleotides
RR42_RS19300: RR42_RS19300 - 30S ribosomal protein S7, at 4,167,591 to 4,168,061
_RS19300
RR42_RS19305: RR42_RS19305 - 30S ribosomal protein S12, at 4,168,288 to 4,168,665
_RS19305
RR42_RS19310: RR42_RS19310 - ATP-dependent DNA helicase RecQ, at 4,169,021 to 4,170,886
_RS19310
RR42_RS19315: RR42_RS19315 - DNA-directed RNA polymerase subunit beta', at 4,171,178 to 4,175,422
_RS19315
Position (kb)
4169
4170
4171 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4169.175 kb on + strand at 4169.176 kb on - strand at 4169.176 kb on - strand at 4169.176 kb on - strand at 4169.176 kb on - strand at 4169.176 kb on - strand at 4169.266 kb on + strand, within RR42_RS19310 at 4169.266 kb on + strand, within RR42_RS19310 at 4169.570 kb on - strand, within RR42_RS19310 at 4169.570 kb on - strand, within RR42_RS19310 at 4169.570 kb on - strand, within RR42_RS19310 at 4169.608 kb on + strand, within RR42_RS19310 at 4169.609 kb on - strand, within RR42_RS19310 at 4169.609 kb on - strand, within RR42_RS19310 at 4169.613 kb on + strand, within RR42_RS19310 at 4169.613 kb on + strand, within RR42_RS19310 at 4169.613 kb on + strand, within RR42_RS19310 at 4169.613 kb on + strand, within RR42_RS19310 at 4169.614 kb on - strand, within RR42_RS19310 at 4169.614 kb on - strand, within RR42_RS19310 at 4169.660 kb on - strand, within RR42_RS19310 at 4169.660 kb on - strand, within RR42_RS19310 at 4169.718 kb on + strand, within RR42_RS19310 at 4169.866 kb on - strand, within RR42_RS19310 at 4169.922 kb on + strand, within RR42_RS19310 at 4169.922 kb on + strand, within RR42_RS19310 at 4169.922 kb on + strand, within RR42_RS19310 at 4169.922 kb on + strand, within RR42_RS19310 at 4169.923 kb on - strand, within RR42_RS19310 at 4169.923 kb on - strand, within RR42_RS19310 at 4169.923 kb on - strand, within RR42_RS19310 at 4169.923 kb on - strand, within RR42_RS19310 at 4169.925 kb on + strand, within RR42_RS19310 at 4169.925 kb on + strand, within RR42_RS19310 at 4169.925 kb on + strand, within RR42_RS19310 at 4170.087 kb on + strand, within RR42_RS19310 at 4170.088 kb on - strand, within RR42_RS19310 at 4170.088 kb on - strand, within RR42_RS19310 at 4170.120 kb on + strand, within RR42_RS19310 at 4170.121 kb on - strand, within RR42_RS19310 at 4170.159 kb on + strand, within RR42_RS19310 at 4170.159 kb on + strand, within RR42_RS19310 at 4170.159 kb on + strand, within RR42_RS19310 at 4170.159 kb on + strand, within RR42_RS19310 at 4170.159 kb on + strand, within RR42_RS19310 at 4170.211 kb on + strand, within RR42_RS19310 at 4170.266 kb on - strand, within RR42_RS19310 at 4170.417 kb on + strand, within RR42_RS19310 at 4170.417 kb on + strand, within RR42_RS19310 at 4170.418 kb on - strand, within RR42_RS19310 at 4170.418 kb on - strand, within RR42_RS19310 at 4170.418 kb on - strand, within RR42_RS19310 at 4170.418 kb on - strand, within RR42_RS19310 at 4170.449 kb on + strand, within RR42_RS19310 at 4170.450 kb on - strand, within RR42_RS19310 at 4170.450 kb on - strand, within RR42_RS19310 at 4170.450 kb on - strand, within RR42_RS19310 at 4170.450 kb on - strand, within RR42_RS19310 at 4170.485 kb on - strand, within RR42_RS19310 at 4170.543 kb on + strand, within RR42_RS19310 at 4170.543 kb on + strand, within RR42_RS19310 at 4170.543 kb on + strand, within RR42_RS19310 at 4170.543 kb on + strand, within RR42_RS19310 at 4170.544 kb on - strand, within RR42_RS19310 at 4170.544 kb on - strand, within RR42_RS19310 at 4170.544 kb on - strand, within RR42_RS19310 at 4170.544 kb on - strand, within RR42_RS19310 at 4170.744 kb on + strand at 4170.886 kb on + strand at 4170.886 kb on + strand at 4170.886 kb on + strand at 4170.886 kb on + strand at 4170.886 kb on + strand at 4170.886 kb on + strand at 4170.887 kb on - strand at 4170.887 kb on - strand at 4170.887 kb on - strand at 4170.887 kb on - strand at 4170.898 kb on - strand at 4170.898 kb on - strand at 4170.924 kb on + strand at 4170.930 kb on + strand at 4170.930 kb on + strand at 4170.931 kb on - strand at 4170.931 kb on - strand at 4170.931 kb on - strand at 4170.931 kb on - strand at 4170.949 kb on - strand at 4170.949 kb on - strand at 4170.953 kb on - strand at 4170.953 kb on - strand at 4170.953 kb on - strand at 4170.953 kb on - strand at 4171.035 kb on + strand at 4171.036 kb on - strand at 4171.076 kb on + strand at 4171.088 kb on + strand at 4171.088 kb on + strand at 4171.090 kb on + strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.091 kb on - strand at 4171.094 kb on + strand at 4171.094 kb on - strand at 4171.095 kb on - strand at 4171.095 kb on - strand at 4171.095 kb on - strand at 4171.095 kb on - strand at 4171.100 kb on - strand at 4171.100 kb on - strand at 4171.103 kb on + strand at 4171.103 kb on + strand at 4171.104 kb on - strand at 4171.104 kb on - strand at 4171.104 kb on - strand at 4171.104 kb on - strand at 4171.104 kb on - strand at 4171.179 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 4,169,175 + -0.1 4,169,176 - +0.3 4,169,176 - -0.9 4,169,176 - +0.0 4,169,176 - -0.6 4,169,176 - +0.7 4,169,266 + RR42_RS19310 0.13 -1.0 4,169,266 + RR42_RS19310 0.13 +0.1 4,169,570 - RR42_RS19310 0.29 -1.3 4,169,570 - RR42_RS19310 0.29 -1.7 4,169,570 - RR42_RS19310 0.29 +0.4 4,169,608 + RR42_RS19310 0.31 -1.6 4,169,609 - RR42_RS19310 0.32 +0.3 4,169,609 - RR42_RS19310 0.32 +0.8 4,169,613 + RR42_RS19310 0.32 +0.4 4,169,613 + RR42_RS19310 0.32 +0.1 4,169,613 + RR42_RS19310 0.32 -0.7 4,169,613 + RR42_RS19310 0.32 -0.1 4,169,614 - RR42_RS19310 0.32 +1.4 4,169,614 - RR42_RS19310 0.32 -0.6 4,169,660 - RR42_RS19310 0.34 -0.0 4,169,660 - RR42_RS19310 0.34 -1.3 4,169,718 + RR42_RS19310 0.37 -0.6 4,169,866 - RR42_RS19310 0.45 +0.3 4,169,922 + RR42_RS19310 0.48 +0.2 4,169,922 + RR42_RS19310 0.48 -0.2 4,169,922 + RR42_RS19310 0.48 -0.8 4,169,922 + RR42_RS19310 0.48 -0.5 4,169,923 - RR42_RS19310 0.48 -1.3 4,169,923 - RR42_RS19310 0.48 -0.3 4,169,923 - RR42_RS19310 0.48 -0.2 4,169,923 - RR42_RS19310 0.48 +0.2 4,169,925 + RR42_RS19310 0.48 -0.3 4,169,925 + RR42_RS19310 0.48 -0.6 4,169,925 + RR42_RS19310 0.48 -1.2 4,170,087 + RR42_RS19310 0.57 -1.2 4,170,088 - RR42_RS19310 0.57 +0.0 4,170,088 - RR42_RS19310 0.57 +0.4 4,170,120 + RR42_RS19310 0.59 -0.5 4,170,121 - RR42_RS19310 0.59 -0.1 4,170,159 + RR42_RS19310 0.61 +0.1 4,170,159 + RR42_RS19310 0.61 -0.6 4,170,159 + RR42_RS19310 0.61 +1.4 4,170,159 + RR42_RS19310 0.61 -1.8 4,170,159 + RR42_RS19310 0.61 -1.1 4,170,211 + RR42_RS19310 0.64 -0.2 4,170,266 - RR42_RS19310 0.67 +1.4 4,170,417 + RR42_RS19310 0.75 -0.5 4,170,417 + RR42_RS19310 0.75 -0.6 4,170,418 - RR42_RS19310 0.75 +0.8 4,170,418 - RR42_RS19310 0.75 -0.1 4,170,418 - RR42_RS19310 0.75 +2.4 4,170,418 - RR42_RS19310 0.75 +0.3 4,170,449 + RR42_RS19310 0.77 +0.1 4,170,450 - RR42_RS19310 0.77 -0.6 4,170,450 - RR42_RS19310 0.77 +0.5 4,170,450 - RR42_RS19310 0.77 -0.4 4,170,450 - RR42_RS19310 0.77 -0.8 4,170,485 - RR42_RS19310 0.78 +0.3 4,170,543 + RR42_RS19310 0.82 +0.3 4,170,543 + RR42_RS19310 0.82 -0.4 4,170,543 + RR42_RS19310 0.82 -0.5 4,170,543 + RR42_RS19310 0.82 -0.0 4,170,544 - RR42_RS19310 0.82 -0.8 4,170,544 - RR42_RS19310 0.82 +0.0 4,170,544 - RR42_RS19310 0.82 +0.3 4,170,544 - RR42_RS19310 0.82 -0.2 4,170,744 + +0.1 4,170,886 + +0.4 4,170,886 + -0.5 4,170,886 + +2.0 4,170,886 + +0.6 4,170,886 + -1.3 4,170,886 + -0.2 4,170,887 - +0.2 4,170,887 - -0.7 4,170,887 - +1.0 4,170,887 - +0.6 4,170,898 - +0.9 4,170,898 - -1.2 4,170,924 + +1.0 4,170,930 + +0.0 4,170,930 + -1.5 4,170,931 - -0.1 4,170,931 - -1.4 4,170,931 - +0.2 4,170,931 - +0.3 4,170,949 - +2.4 4,170,949 - -0.5 4,170,953 - +0.3 4,170,953 - +0.2 4,170,953 - +0.4 4,170,953 - -0.2 4,171,035 + -0.0 4,171,036 - +0.4 4,171,076 + -0.3 4,171,088 + +0.6 4,171,088 + +0.1 4,171,090 + -0.2 4,171,091 - -1.3 4,171,091 - +0.4 4,171,091 - -0.6 4,171,091 - +0.0 4,171,091 - +0.7 4,171,091 - +1.7 4,171,091 - +0.2 4,171,091 - +0.7 4,171,094 + +0.4 4,171,094 - +0.4 4,171,095 - -0.6 4,171,095 - +0.3 4,171,095 - +0.7 4,171,095 - +0.4 4,171,100 - +1.0 4,171,100 - -0.5 4,171,103 + +0.1 4,171,103 + +2.0 4,171,104 - -0.6 4,171,104 - +3.4 4,171,104 - +0.4 4,171,104 - +0.3 4,171,104 - -0.5 4,171,179 + -1.5
Or see this region's nucleotide sequence