Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS19310

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS19300 and RR42_RS19305 are separated by 226 nucleotidesRR42_RS19305 and RR42_RS19310 are separated by 355 nucleotidesRR42_RS19310 and RR42_RS19315 are separated by 291 nucleotides RR42_RS19300: RR42_RS19300 - 30S ribosomal protein S7, at 4,167,591 to 4,168,061 _RS19300 RR42_RS19305: RR42_RS19305 - 30S ribosomal protein S12, at 4,168,288 to 4,168,665 _RS19305 RR42_RS19310: RR42_RS19310 - ATP-dependent DNA helicase RecQ, at 4,169,021 to 4,170,886 _RS19310 RR42_RS19315: RR42_RS19315 - DNA-directed RNA polymerase subunit beta', at 4,171,178 to 4,175,422 _RS19315 Position (kb) 4169 4170 4171Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4169.175 kb on + strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.176 kb on - strandat 4169.266 kb on + strand, within RR42_RS19310at 4169.266 kb on + strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.570 kb on - strand, within RR42_RS19310at 4169.608 kb on + strand, within RR42_RS19310at 4169.609 kb on - strand, within RR42_RS19310at 4169.609 kb on - strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.613 kb on + strand, within RR42_RS19310at 4169.614 kb on - strand, within RR42_RS19310at 4169.614 kb on - strand, within RR42_RS19310at 4169.660 kb on - strand, within RR42_RS19310at 4169.660 kb on - strand, within RR42_RS19310at 4169.718 kb on + strand, within RR42_RS19310at 4169.866 kb on - strand, within RR42_RS19310at 4169.922 kb on + strand, within RR42_RS19310at 4169.922 kb on + strand, within RR42_RS19310at 4169.922 kb on + strand, within RR42_RS19310at 4169.922 kb on + strand, within RR42_RS19310at 4169.923 kb on - strand, within RR42_RS19310at 4169.923 kb on - strand, within RR42_RS19310at 4169.923 kb on - strand, within RR42_RS19310at 4169.923 kb on - strand, within RR42_RS19310at 4169.925 kb on + strand, within RR42_RS19310at 4169.925 kb on + strand, within RR42_RS19310at 4169.925 kb on + strand, within RR42_RS19310at 4170.087 kb on + strand, within RR42_RS19310at 4170.088 kb on - strand, within RR42_RS19310at 4170.088 kb on - strand, within RR42_RS19310at 4170.120 kb on + strand, within RR42_RS19310at 4170.121 kb on - strand, within RR42_RS19310at 4170.159 kb on + strand, within RR42_RS19310at 4170.159 kb on + strand, within RR42_RS19310at 4170.159 kb on + strand, within RR42_RS19310at 4170.159 kb on + strand, within RR42_RS19310at 4170.159 kb on + strand, within RR42_RS19310at 4170.211 kb on + strand, within RR42_RS19310at 4170.266 kb on - strand, within RR42_RS19310at 4170.417 kb on + strand, within RR42_RS19310at 4170.417 kb on + strand, within RR42_RS19310at 4170.418 kb on - strand, within RR42_RS19310at 4170.418 kb on - strand, within RR42_RS19310at 4170.418 kb on - strand, within RR42_RS19310at 4170.418 kb on - strand, within RR42_RS19310at 4170.449 kb on + strand, within RR42_RS19310at 4170.450 kb on - strand, within RR42_RS19310at 4170.450 kb on - strand, within RR42_RS19310at 4170.450 kb on - strand, within RR42_RS19310at 4170.450 kb on - strand, within RR42_RS19310at 4170.485 kb on - strand, within RR42_RS19310at 4170.543 kb on + strand, within RR42_RS19310at 4170.543 kb on + strand, within RR42_RS19310at 4170.543 kb on + strand, within RR42_RS19310at 4170.543 kb on + strand, within RR42_RS19310at 4170.544 kb on - strand, within RR42_RS19310at 4170.544 kb on - strand, within RR42_RS19310at 4170.544 kb on - strand, within RR42_RS19310at 4170.544 kb on - strand, within RR42_RS19310at 4170.744 kb on + strandat 4170.886 kb on + strandat 4170.886 kb on + strandat 4170.886 kb on + strandat 4170.886 kb on + strandat 4170.886 kb on + strandat 4170.886 kb on + strandat 4170.887 kb on - strandat 4170.887 kb on - strandat 4170.887 kb on - strandat 4170.887 kb on - strandat 4170.898 kb on - strandat 4170.898 kb on - strandat 4170.924 kb on + strandat 4170.930 kb on + strandat 4170.930 kb on + strandat 4170.931 kb on - strandat 4170.931 kb on - strandat 4170.931 kb on - strandat 4170.931 kb on - strandat 4170.949 kb on - strandat 4170.949 kb on - strandat 4170.953 kb on - strandat 4170.953 kb on - strandat 4170.953 kb on - strandat 4170.953 kb on - strandat 4171.035 kb on + strandat 4171.036 kb on - strandat 4171.076 kb on + strandat 4171.088 kb on + strandat 4171.088 kb on + strandat 4171.090 kb on + strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.091 kb on - strandat 4171.094 kb on + strandat 4171.094 kb on - strandat 4171.095 kb on - strandat 4171.095 kb on - strandat 4171.095 kb on - strandat 4171.095 kb on - strandat 4171.100 kb on - strandat 4171.100 kb on - strandat 4171.103 kb on + strandat 4171.103 kb on + strandat 4171.104 kb on - strandat 4171.104 kb on - strandat 4171.104 kb on - strandat 4171.104 kb on - strandat 4171.104 kb on - strandat 4171.179 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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4,169,175 + -0.1
4,169,176 - +0.3
4,169,176 - -0.9
4,169,176 - +0.0
4,169,176 - -0.6
4,169,176 - +0.7
4,169,266 + RR42_RS19310 0.13 -1.0
4,169,266 + RR42_RS19310 0.13 +0.1
4,169,570 - RR42_RS19310 0.29 -1.3
4,169,570 - RR42_RS19310 0.29 -1.7
4,169,570 - RR42_RS19310 0.29 +0.4
4,169,608 + RR42_RS19310 0.31 -1.6
4,169,609 - RR42_RS19310 0.32 +0.3
4,169,609 - RR42_RS19310 0.32 +0.8
4,169,613 + RR42_RS19310 0.32 +0.4
4,169,613 + RR42_RS19310 0.32 +0.1
4,169,613 + RR42_RS19310 0.32 -0.7
4,169,613 + RR42_RS19310 0.32 -0.1
4,169,614 - RR42_RS19310 0.32 +1.4
4,169,614 - RR42_RS19310 0.32 -0.6
4,169,660 - RR42_RS19310 0.34 -0.0
4,169,660 - RR42_RS19310 0.34 -1.3
4,169,718 + RR42_RS19310 0.37 -0.6
4,169,866 - RR42_RS19310 0.45 +0.3
4,169,922 + RR42_RS19310 0.48 +0.2
4,169,922 + RR42_RS19310 0.48 -0.2
4,169,922 + RR42_RS19310 0.48 -0.8
4,169,922 + RR42_RS19310 0.48 -0.5
4,169,923 - RR42_RS19310 0.48 -1.3
4,169,923 - RR42_RS19310 0.48 -0.3
4,169,923 - RR42_RS19310 0.48 -0.2
4,169,923 - RR42_RS19310 0.48 +0.2
4,169,925 + RR42_RS19310 0.48 -0.3
4,169,925 + RR42_RS19310 0.48 -0.6
4,169,925 + RR42_RS19310 0.48 -1.2
4,170,087 + RR42_RS19310 0.57 -1.2
4,170,088 - RR42_RS19310 0.57 +0.0
4,170,088 - RR42_RS19310 0.57 +0.4
4,170,120 + RR42_RS19310 0.59 -0.5
4,170,121 - RR42_RS19310 0.59 -0.1
4,170,159 + RR42_RS19310 0.61 +0.1
4,170,159 + RR42_RS19310 0.61 -0.6
4,170,159 + RR42_RS19310 0.61 +1.4
4,170,159 + RR42_RS19310 0.61 -1.8
4,170,159 + RR42_RS19310 0.61 -1.1
4,170,211 + RR42_RS19310 0.64 -0.2
4,170,266 - RR42_RS19310 0.67 +1.4
4,170,417 + RR42_RS19310 0.75 -0.5
4,170,417 + RR42_RS19310 0.75 -0.6
4,170,418 - RR42_RS19310 0.75 +0.8
4,170,418 - RR42_RS19310 0.75 -0.1
4,170,418 - RR42_RS19310 0.75 +2.4
4,170,418 - RR42_RS19310 0.75 +0.3
4,170,449 + RR42_RS19310 0.77 +0.1
4,170,450 - RR42_RS19310 0.77 -0.6
4,170,450 - RR42_RS19310 0.77 +0.5
4,170,450 - RR42_RS19310 0.77 -0.4
4,170,450 - RR42_RS19310 0.77 -0.8
4,170,485 - RR42_RS19310 0.78 +0.3
4,170,543 + RR42_RS19310 0.82 +0.3
4,170,543 + RR42_RS19310 0.82 -0.4
4,170,543 + RR42_RS19310 0.82 -0.5
4,170,543 + RR42_RS19310 0.82 -0.0
4,170,544 - RR42_RS19310 0.82 -0.8
4,170,544 - RR42_RS19310 0.82 +0.0
4,170,544 - RR42_RS19310 0.82 +0.3
4,170,544 - RR42_RS19310 0.82 -0.2
4,170,744 + +0.1
4,170,886 + +0.4
4,170,886 + -0.5
4,170,886 + +2.0
4,170,886 + +0.6
4,170,886 + -1.3
4,170,886 + -0.2
4,170,887 - +0.2
4,170,887 - -0.7
4,170,887 - +1.0
4,170,887 - +0.6
4,170,898 - +0.9
4,170,898 - -1.2
4,170,924 + +1.0
4,170,930 + +0.0
4,170,930 + -1.5
4,170,931 - -0.1
4,170,931 - -1.4
4,170,931 - +0.2
4,170,931 - +0.3
4,170,949 - +2.4
4,170,949 - -0.5
4,170,953 - +0.3
4,170,953 - +0.2
4,170,953 - +0.4
4,170,953 - -0.2
4,171,035 + -0.0
4,171,036 - +0.4
4,171,076 + -0.3
4,171,088 + +0.6
4,171,088 + +0.1
4,171,090 + -0.2
4,171,091 - -1.3
4,171,091 - +0.4
4,171,091 - -0.6
4,171,091 - +0.0
4,171,091 - +0.7
4,171,091 - +1.7
4,171,091 - +0.2
4,171,091 - +0.7
4,171,094 + +0.4
4,171,094 - +0.4
4,171,095 - -0.6
4,171,095 - +0.3
4,171,095 - +0.7
4,171,095 - +0.4
4,171,100 - +1.0
4,171,100 - -0.5
4,171,103 + +0.1
4,171,103 + +2.0
4,171,104 - -0.6
4,171,104 - +3.4
4,171,104 - +0.4
4,171,104 - +0.3
4,171,104 - -0.5
4,171,179 + -1.5

Or see this region's nucleotide sequence