Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08700

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08685 and RR42_RS08690 are separated by 27 nucleotidesRR42_RS08690 and RR42_RS08695 overlap by 29 nucleotidesRR42_RS08695 and RR42_RS08700 overlap by 4 nucleotidesRR42_RS08700 and RR42_RS08705 are separated by 140 nucleotidesRR42_RS08705 and RR42_RS08710 are separated by 82 nucleotides RR42_RS08685: RR42_RS08685 - hypothetical protein, at 1,820,601 to 1,821,131 _RS08685 RR42_RS08690: RR42_RS08690 - hypothetical protein, at 1,821,159 to 1,821,581 _RS08690 RR42_RS08695: RR42_RS08695 - hypothetical protein, at 1,821,553 to 1,821,948 _RS08695 RR42_RS08700: RR42_RS08700 - hypothetical protein, at 1,821,945 to 1,822,304 _RS08700 RR42_RS08705: RR42_RS08705 - pirin, at 1,822,445 to 1,823,152 _RS08705 RR42_RS08710: RR42_RS08710 - oxidoreductase, at 1,823,235 to 1,823,999 _RS08710 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1820.975 kb on + strand, within RR42_RS08685at 1821.031 kb on + strand, within RR42_RS08685at 1821.032 kb on - strand, within RR42_RS08685at 1821.055 kb on + strand, within RR42_RS08685at 1821.055 kb on + strand, within RR42_RS08685at 1821.055 kb on + strand, within RR42_RS08685at 1821.056 kb on - strand, within RR42_RS08685at 1821.056 kb on - strand, within RR42_RS08685at 1821.143 kb on - strandat 1821.143 kb on - strandat 1821.143 kb on - strandat 1821.199 kb on + strandat 1821.205 kb on + strand, within RR42_RS08690at 1821.429 kb on + strand, within RR42_RS08690at 1821.429 kb on + strand, within RR42_RS08690at 1821.430 kb on - strand, within RR42_RS08690at 1821.708 kb on + strand, within RR42_RS08695at 1821.709 kb on - strand, within RR42_RS08695at 1821.709 kb on - strand, within RR42_RS08695at 1821.830 kb on - strand, within RR42_RS08695at 1821.876 kb on - strand, within RR42_RS08695at 1821.876 kb on - strand, within RR42_RS08695at 1821.879 kb on + strand, within RR42_RS08695at 1821.880 kb on - strand, within RR42_RS08695at 1821.880 kb on - strand, within RR42_RS08695at 1821.904 kb on + strand, within RR42_RS08695at 1821.905 kb on - strand, within RR42_RS08695at 1821.905 kb on - strand, within RR42_RS08695at 1822.179 kb on + strand, within RR42_RS08700at 1822.179 kb on + strand, within RR42_RS08700at 1822.180 kb on - strand, within RR42_RS08700at 1822.180 kb on - strand, within RR42_RS08700at 1822.182 kb on + strand, within RR42_RS08700at 1822.186 kb on - strand, within RR42_RS08700at 1822.220 kb on + strand, within RR42_RS08700at 1822.278 kb on + strandat 1822.346 kb on - strandat 1822.363 kb on + strandat 1822.364 kb on - strandat 1822.364 kb on - strandat 1822.364 kb on - strandat 1822.463 kb on + strandat 1822.463 kb on + strandat 1822.498 kb on + strandat 1822.499 kb on - strandat 1822.757 kb on - strand, within RR42_RS08705at 1822.757 kb on - strand, within RR42_RS08705at 1822.929 kb on + strand, within RR42_RS08705at 1822.930 kb on - strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.031 kb on + strand, within RR42_RS08705at 1823.032 kb on - strand, within RR42_RS08705at 1823.134 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,820,975 + RR42_RS08685 0.70 +2.3
1,821,031 + RR42_RS08685 0.81 -1.2
1,821,032 - RR42_RS08685 0.81 -0.3
1,821,055 + RR42_RS08685 0.85 -1.0
1,821,055 + RR42_RS08685 0.85 +0.1
1,821,055 + RR42_RS08685 0.85 -0.4
1,821,056 - RR42_RS08685 0.86 +0.3
1,821,056 - RR42_RS08685 0.86 +0.2
1,821,143 - +0.4
1,821,143 - -0.2
1,821,143 - -0.2
1,821,199 + +0.1
1,821,205 + RR42_RS08690 0.11 +0.3
1,821,429 + RR42_RS08690 0.64 -0.3
1,821,429 + RR42_RS08690 0.64 -1.0
1,821,430 - RR42_RS08690 0.64 +0.3
1,821,708 + RR42_RS08695 0.39 +0.5
1,821,709 - RR42_RS08695 0.39 +0.2
1,821,709 - RR42_RS08695 0.39 +0.0
1,821,830 - RR42_RS08695 0.70 -0.3
1,821,876 - RR42_RS08695 0.82 +1.4
1,821,876 - RR42_RS08695 0.82 -0.4
1,821,879 + RR42_RS08695 0.82 -0.2
1,821,880 - RR42_RS08695 0.83 +1.0
1,821,880 - RR42_RS08695 0.83 -0.1
1,821,904 + RR42_RS08695 0.89 -1.3
1,821,905 - RR42_RS08695 0.89 -0.2
1,821,905 - RR42_RS08695 0.89 -1.1
1,822,179 + RR42_RS08700 0.65 +0.3
1,822,179 + RR42_RS08700 0.65 -1.1
1,822,180 - RR42_RS08700 0.65 -0.3
1,822,180 - RR42_RS08700 0.65 +0.4
1,822,182 + RR42_RS08700 0.66 -2.6
1,822,186 - RR42_RS08700 0.67 -0.4
1,822,220 + RR42_RS08700 0.76 -0.6
1,822,278 + +1.2
1,822,346 - -3.1
1,822,363 + -0.8
1,822,364 - +0.4
1,822,364 - -0.1
1,822,364 - +0.1
1,822,463 + -1.1
1,822,463 + -0.4
1,822,498 + +0.4
1,822,499 - +0.7
1,822,757 - RR42_RS08705 0.44 -0.2
1,822,757 - RR42_RS08705 0.44 +0.5
1,822,929 + RR42_RS08705 0.68 +1.2
1,822,930 - RR42_RS08705 0.69 -0.8
1,823,031 + RR42_RS08705 0.83 +1.2
1,823,031 + RR42_RS08705 0.83 -0.3
1,823,031 + RR42_RS08705 0.83 -0.2
1,823,031 + RR42_RS08705 0.83 -0.6
1,823,032 - RR42_RS08705 0.83 +0.9
1,823,134 - +0.6

Or see this region's nucleotide sequence