Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS04270 and RR42_RS04275 are separated by 116 nucleotides RR42_RS04275 and RR42_RS04280 overlap by 8 nucleotides RR42_RS04280 and RR42_RS04285 are separated by 189 nucleotides RR42_RS04285 and RR42_RS04290 are separated by 180 nucleotides
RR42_RS04270: RR42_RS04270 - MFS transporter, at 949,957 to 951,261
_RS04270
RR42_RS04275: RR42_RS04275 - hypothetical protein, at 951,378 to 951,620
_RS04275
RR42_RS04280: RR42_RS04280 - aldehyde dehydrogenase, at 951,613 to 953,049
_RS04280
RR42_RS04285: RR42_RS04285 - inorganic pyrophosphatase, at 953,239 to 953,766
_RS04285
RR42_RS04290: RR42_RS04290 - cytochrome B561, at 953,947 to 954,501
_RS04290
Position (kb) 951
952
953
954 Strain fitness (log2 ratio) -2
-1
0
1
2 at 950.841 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 950.910 kb on - strand, within RR42_RS04270 at 951.042 kb on - strand, within RR42_RS04270 at 951.074 kb on + strand, within RR42_RS04270 at 951.158 kb on + strand at 951.159 kb on - strand at 951.203 kb on + strand at 951.203 kb on + strand at 951.204 kb on - strand at 951.244 kb on + strand at 951.244 kb on + strand at 951.245 kb on - strand at 951.288 kb on + strand at 951.288 kb on + strand at 951.289 kb on - strand at 951.289 kb on - strand at 951.455 kb on - strand, within RR42_RS04275 at 951.611 kb on + strand at 951.611 kb on + strand at 951.612 kb on - strand at 951.614 kb on + strand at 951.615 kb on - strand at 951.615 kb on - strand at 951.687 kb on - strand at 951.715 kb on + strand at 951.721 kb on + strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.740 kb on + strand at 951.969 kb on - strand, within RR42_RS04280 at 952.659 kb on + strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.716 kb on - strand, within RR42_RS04280 at 952.984 kb on + strand at 952.984 kb on + strand at 953.054 kb on + strand at 953.195 kb on + strand at 953.195 kb on + strand at 953.196 kb on - strand at 953.196 kb on - strand at 953.764 kb on + strand at 953.764 kb on + strand at 953.765 kb on - strand at 953.886 kb on + strand at 953.900 kb on + strand at 953.939 kb on + strand at 953.939 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.955 kb on + strand at 953.986 kb on + strand at 954.020 kb on + strand, within RR42_RS04290 at 954.020 kb on + strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.021 kb on - strand, within RR42_RS04290 at 954.043 kb on + strand, within RR42_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 950,841 - RR42_RS04270 0.68 -2.1 950,910 - RR42_RS04270 0.73 +0.1 950,910 - RR42_RS04270 0.73 -1.2 950,910 - RR42_RS04270 0.73 -0.6 950,910 - RR42_RS04270 0.73 +1.6 950,910 - RR42_RS04270 0.73 -0.5 951,042 - RR42_RS04270 0.83 +0.2 951,074 + RR42_RS04270 0.86 +0.0 951,158 + -0.3 951,159 - +1.0 951,203 + +0.1 951,203 + +0.7 951,204 - +0.2 951,244 + -0.2 951,244 + +0.3 951,245 - +1.1 951,288 + -1.9 951,288 + -0.5 951,289 - +0.9 951,289 - +0.3 951,455 - RR42_RS04275 0.32 +0.3 951,611 + -0.6 951,611 + -0.6 951,612 - -1.2 951,614 + -0.9 951,615 - -0.2 951,615 - -1.2 951,687 - -1.9 951,715 + -0.0 951,721 + -1.0 951,740 + -1.2 951,740 + -0.9 951,740 + -0.8 951,969 - RR42_RS04280 0.25 -0.8 952,659 + RR42_RS04280 0.73 -1.2 952,716 - RR42_RS04280 0.77 -0.2 952,716 - RR42_RS04280 0.77 -1.2 952,984 + +0.0 952,984 + -0.6 953,054 + -0.6 953,195 + -0.2 953,195 + +1.1 953,196 - -0.4 953,196 - +0.5 953,764 + -0.3 953,764 + +0.6 953,765 - +0.7 953,886 + -0.7 953,900 + -1.2 953,939 + +0.1 953,939 + +0.6 953,955 + +0.3 953,955 + +0.7 953,955 + +0.3 953,986 + -0.9 954,020 + RR42_RS04290 0.13 +0.7 954,020 + RR42_RS04290 0.13 +0.7 954,021 - RR42_RS04290 0.13 +0.8 954,021 - RR42_RS04290 0.13 -0.4 954,043 + RR42_RS04290 0.17 +2.7
Or see this region's nucleotide sequence