Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03875 and RR42_RS03880 are separated by 47 nucleotides RR42_RS03880 and RR42_RS03885 overlap by 1 nucleotides RR42_RS03885 and RR42_RS03890 overlap by 8 nucleotides RR42_RS03890 and RR42_RS03895 overlap by 4 nucleotides
RR42_RS03875: RR42_RS03875 - nucleoside 2-deoxyribosyltransferase, at 855,428 to 855,976
_RS03875
RR42_RS03880: RR42_RS03880 - hypothetical protein, at 856,024 to 856,680
_RS03880
RR42_RS03885: RR42_RS03885 - mammalian cell entry protein, at 856,680 to 858,311
_RS03885
RR42_RS03890: RR42_RS03890 - paraquat-inducible protein A, at 858,304 to 859,038
_RS03890
RR42_RS03895: RR42_RS03895 - paraquat-inducible protein A, at 859,035 to 859,667
_RS03895
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 856.014 kb on + strand at 856.298 kb on + strand, within RR42_RS03880 at 856.667 kb on - strand at 856.947 kb on + strand, within RR42_RS03885 at 857.129 kb on - strand, within RR42_RS03885 at 857.201 kb on + strand, within RR42_RS03885 at 857.260 kb on + strand, within RR42_RS03885 at 857.261 kb on - strand, within RR42_RS03885 at 857.309 kb on - strand, within RR42_RS03885 at 857.338 kb on - strand, within RR42_RS03885 at 857.733 kb on + strand, within RR42_RS03885 at 857.744 kb on - strand, within RR42_RS03885 at 857.746 kb on + strand, within RR42_RS03885 at 857.747 kb on - strand, within RR42_RS03885 at 857.895 kb on - strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.896 kb on + strand, within RR42_RS03885 at 857.897 kb on - strand, within RR42_RS03885 at 858.300 kb on + strand at 858.301 kb on - strand at 858.318 kb on + strand at 858.319 kb on - strand at 858.319 kb on - strand at 858.515 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.661 kb on + strand, within RR42_RS03890 at 858.662 kb on - strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.665 kb on + strand, within RR42_RS03890 at 858.666 kb on - strand, within RR42_RS03890 at 858.750 kb on - strand, within RR42_RS03890 at 859.300 kb on + strand, within RR42_RS03895 at 859.301 kb on - strand, within RR42_RS03895
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 856,014 + -0.5 856,298 + RR42_RS03880 0.42 +1.0 856,667 - -0.1 856,947 + RR42_RS03885 0.16 -0.1 857,129 - RR42_RS03885 0.28 -0.2 857,201 + RR42_RS03885 0.32 +0.2 857,260 + RR42_RS03885 0.36 +0.6 857,261 - RR42_RS03885 0.36 -0.5 857,309 - RR42_RS03885 0.39 +0.0 857,338 - RR42_RS03885 0.40 -2.2 857,733 + RR42_RS03885 0.65 -0.0 857,744 - RR42_RS03885 0.65 +0.1 857,746 + RR42_RS03885 0.65 +0.8 857,747 - RR42_RS03885 0.65 -0.1 857,895 - RR42_RS03885 0.74 +0.1 857,896 + RR42_RS03885 0.75 -0.3 857,896 + RR42_RS03885 0.75 -0.1 857,897 - RR42_RS03885 0.75 -0.1 858,300 + -0.1 858,301 - +0.1 858,318 + +0.1 858,319 - +0.4 858,319 - -0.2 858,515 + RR42_RS03890 0.29 +0.7 858,661 + RR42_RS03890 0.49 -0.3 858,661 + RR42_RS03890 0.49 -0.7 858,662 - RR42_RS03890 0.49 -3.0 858,665 + RR42_RS03890 0.49 -0.8 858,665 + RR42_RS03890 0.49 -0.6 858,665 + RR42_RS03890 0.49 -0.4 858,666 - RR42_RS03890 0.49 +0.3 858,750 - RR42_RS03890 0.61 -1.3 859,300 + RR42_RS03895 0.42 +1.4 859,301 - RR42_RS03895 0.42 -0.6
Or see this region's nucleotide sequence