Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03235

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03230 and RR42_RS03235 are separated by 105 nucleotidesRR42_RS03235 and RR42_RS03240 are separated by 267 nucleotides RR42_RS03230: RR42_RS03230 - phosphoribosylaminoimidazole carboxylase, at 715,024 to 716,268 _RS03230 RR42_RS03235: RR42_RS03235 - translation factor Sua5, at 716,374 to 717,360 _RS03235 RR42_RS03240: RR42_RS03240 - integrase, at 717,628 to 718,800 _RS03240 Position (kb) 716 717 718Strain fitness (log2 ratio) -3 -2 -1 0 1at 716.324 kb on + strandat 716.324 kb on + strandat 716.324 kb on + strandat 716.324 kb on + strandat 716.324 kb on + strandat 716.324 kb on + strandat 716.332 kb on + strandat 716.348 kb on + strandat 717.358 kb on + strandat 717.428 kb on + strandat 717.429 kb on - strandat 717.429 kb on - strandat 717.445 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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716,324 + -0.1
716,324 + -3.1
716,324 + +0.3
716,324 + +0.2
716,324 + -0.1
716,324 + +0.0
716,332 + +0.5
716,348 + -0.6
717,358 + -0.7
717,428 + -0.1
717,429 - +0.6
717,429 - +0.0
717,445 - -0.2

Or see this region's nucleotide sequence