Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS04770

Experiment: Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS04760 and MMJJ_RS04765 are separated by 40 nucleotidesMMJJ_RS04765 and MMJJ_RS04770 are separated by 18 nucleotidesMMJJ_RS04770 and MMJJ_RS04775 are separated by 180 nucleotides MMJJ_RS04760: MMJJ_RS04760 - 5,10-methenyltetrahydromethanopterin hydrogenase cofactor biosynthesis protein HmdC, at 893,108 to 894,640 _RS04760 MMJJ_RS04765: MMJJ_RS04765 - metal-dependent hydrolase, at 894,681 to 895,355 _RS04765 MMJJ_RS04770: MMJJ_RS04770 - formate-dependent phosphoribosylglycinamide formyltransferase, at 895,374 to 896,540 _RS04770 MMJJ_RS04775: MMJJ_RS04775 - DNA-binding protein, at 896,721 to 897,632 _RS04775 Position (kb) 895 896 897Strain fitness (log2 ratio) -3 -2 -1 0 1at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.401 kb on - strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.402 kb on + strand, within MMJJ_RS04760at 894.404 kb on + strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.444 kb on - strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.445 kb on + strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.446 kb on - strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.447 kb on + strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.450 kb on - strand, within MMJJ_RS04760at 894.496 kb on + strandat 894.511 kb on + strandat 894.518 kb on - strandat 894.519 kb on + strandat 894.519 kb on + strandat 894.575 kb on + strandat 894.577 kb on - strandat 894.578 kb on + strandat 894.578 kb on + strandat 894.601 kb on + strandat 894.634 kb on + strandat 894.634 kb on + strandat 894.634 kb on + strandat 894.698 kb on - strandat 894.699 kb on + strandat 894.699 kb on + strandat 894.732 kb on + strandat 894.732 kb on + strandat 894.761 kb on + strand, within MMJJ_RS04765at 894.788 kb on + strand, within MMJJ_RS04765at 894.799 kb on - strand, within MMJJ_RS04765at 894.812 kb on + strand, within MMJJ_RS04765at 894.812 kb on + strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.828 kb on - strand, within MMJJ_RS04765at 894.829 kb on + strand, within MMJJ_RS04765at 894.829 kb on + strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.830 kb on - strand, within MMJJ_RS04765at 894.831 kb on + strand, within MMJJ_RS04765at 894.831 kb on + strand, within MMJJ_RS04765at 894.846 kb on + strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.867 kb on - strand, within MMJJ_RS04765at 894.871 kb on - strand, within MMJJ_RS04765at 894.871 kb on - strand, within MMJJ_RS04765at 894.885 kb on - strand, within MMJJ_RS04765at 894.935 kb on - strand, within MMJJ_RS04765at 894.949 kb on + strand, within MMJJ_RS04765at 894.995 kb on - strand, within MMJJ_RS04765at 895.088 kb on - strand, within MMJJ_RS04765at 895.089 kb on + strand, within MMJJ_RS04765at 895.160 kb on - strand, within MMJJ_RS04765at 895.161 kb on + strand, within MMJJ_RS04765at 895.185 kb on - strand, within MMJJ_RS04765at 895.190 kb on + strand, within MMJJ_RS04765at 895.209 kb on - strand, within MMJJ_RS04765at 895.277 kb on - strand, within MMJJ_RS04765at 895.287 kb on + strand, within MMJJ_RS04765at 895.599 kb on - strand, within MMJJ_RS04770at 895.677 kb on + strand, within MMJJ_RS04770at 895.707 kb on - strand, within MMJJ_RS04770at 896.085 kb on - strand, within MMJJ_RS04770at 896.086 kb on + strand, within MMJJ_RS04770at 896.090 kb on - strandat 896.280 kb on + strand, within MMJJ_RS04770at 896.310 kb on - strand, within MMJJ_RS04770at 896.558 kb on - strandat 896.598 kb on - strandat 896.610 kb on - strandat 896.610 kb on - strandat 896.610 kb on - strandat 896.610 kb on - strandat 896.611 kb on + strandat 896.613 kb on - strandat 896.613 kb on - strandat 896.613 kb on - strandat 896.614 kb on + strandat 896.614 kb on + strandat 896.615 kb on - strandat 896.615 kb on - strandat 896.615 kb on - strandat 896.616 kb on + strandat 896.616 kb on + strandat 896.616 kb on + strandat 896.638 kb on + strandat 896.686 kb on - strandat 896.686 kb on - strandat 896.706 kb on - strandat 896.750 kb on - strandat 896.751 kb on + strandat 896.751 kb on + strandat 896.751 kb on + strandat 896.752 kb on - strandat 896.752 kb on - strandat 896.752 kb on - strandat 896.781 kb on + strandat 896.810 kb on - strandat 896.812 kb on - strandat 896.812 kb on - strandat 896.813 kb on + strand, within MMJJ_RS04775at 896.813 kb on + strand, within MMJJ_RS04775at 896.813 kb on + strand, within MMJJ_RS04775at 896.813 kb on + strand, within MMJJ_RS04775at 896.813 kb on + strand, within MMJJ_RS04775at 896.813 kb on + strand, within MMJJ_RS04775at 896.816 kb on - strand, within MMJJ_RS04775at 896.817 kb on + strand, within MMJJ_RS04775at 896.817 kb on + strand, within MMJJ_RS04775at 896.870 kb on - strand, within MMJJ_RS04775at 896.910 kb on + strand, within MMJJ_RS04775at 896.921 kb on + strand, within MMJJ_RS04775at 896.960 kb on + strand, within MMJJ_RS04775at 897.019 kb on - strand, within MMJJ_RS04775at 897.067 kb on - strand, within MMJJ_RS04775at 897.068 kb on + strand, within MMJJ_RS04775at 897.187 kb on - strand, within MMJJ_RS04775at 897.188 kb on + strand, within MMJJ_RS04775at 897.364 kb on - strand, within MMJJ_RS04775at 897.413 kb on + strand, within MMJJ_RS04775at 897.413 kb on + strand, within MMJJ_RS04775at 897.417 kb on + strand, within MMJJ_RS04775at 897.423 kb on + strand, within MMJJ_RS04775at 897.423 kb on + strand, within MMJJ_RS04775at 897.518 kb on + strand, within MMJJ_RS04775at 897.520 kb on - strand, within MMJJ_RS04775at 897.538 kb on - strand, within MMJJ_RS04775at 897.539 kb on + strand, within MMJJ_RS04775at 897.540 kb on - strand, within MMJJ_RS04775

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas, 2.5g/L bicarb, 200 mM MOPs, 20 psi N2CO2, SO4 & Casamino Acid FREE
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894,401 - MMJJ_RS04760 0.84 +0.8
894,401 - MMJJ_RS04760 0.84 +0.4
894,401 - MMJJ_RS04760 0.84 +0.3
894,401 - MMJJ_RS04760 0.84 -0.8
894,401 - MMJJ_RS04760 0.84 -0.0
894,402 + MMJJ_RS04760 0.84 -0.3
894,402 + MMJJ_RS04760 0.84 +0.6
894,402 + MMJJ_RS04760 0.84 +0.2
894,402 + MMJJ_RS04760 0.84 +0.2
894,404 + MMJJ_RS04760 0.85 -0.2
894,444 - MMJJ_RS04760 0.87 +0.1
894,444 - MMJJ_RS04760 0.87 -0.4
894,444 - MMJJ_RS04760 0.87 +0.2
894,445 + MMJJ_RS04760 0.87 -0.2
894,445 + MMJJ_RS04760 0.87 -1.6
894,445 + MMJJ_RS04760 0.87 +0.1
894,445 + MMJJ_RS04760 0.87 -0.4
894,445 + MMJJ_RS04760 0.87 -0.9
894,445 + MMJJ_RS04760 0.87 +0.2
894,445 + MMJJ_RS04760 0.87 +0.3
894,445 + MMJJ_RS04760 0.87 +0.4
894,446 - MMJJ_RS04760 0.87 +0.7
894,446 - MMJJ_RS04760 0.87 +0.2
894,446 - MMJJ_RS04760 0.87 -1.7
894,446 - MMJJ_RS04760 0.87 -0.7
894,447 + MMJJ_RS04760 0.87 +0.8
894,447 + MMJJ_RS04760 0.87 -0.9
894,447 + MMJJ_RS04760 0.87 -0.1
894,447 + MMJJ_RS04760 0.87 -0.6
894,447 + MMJJ_RS04760 0.87 +0.7
894,447 + MMJJ_RS04760 0.87 -0.4
894,447 + MMJJ_RS04760 0.87 -0.6
894,450 - MMJJ_RS04760 0.88 -0.6
894,450 - MMJJ_RS04760 0.88 -0.2
894,450 - MMJJ_RS04760 0.88 -0.4
894,496 + +0.5
894,511 + -0.1
894,518 - -1.3
894,519 + +0.5
894,519 + -0.8
894,575 + +0.2
894,577 - -0.3
894,578 + -0.1
894,578 + +1.0
894,601 + -0.1
894,634 + +0.5
894,634 + +0.2
894,634 + +1.5
894,698 - -2.4
894,699 + -0.1
894,699 + +0.3
894,732 + -1.3
894,732 + +0.2
894,761 + MMJJ_RS04765 0.12 -1.8
894,788 + MMJJ_RS04765 0.16 -0.5
894,799 - MMJJ_RS04765 0.17 +0.0
894,812 + MMJJ_RS04765 0.19 -0.6
894,812 + MMJJ_RS04765 0.19 -1.4
894,828 - MMJJ_RS04765 0.22 -1.4
894,828 - MMJJ_RS04765 0.22 -0.9
894,828 - MMJJ_RS04765 0.22 -1.0
894,828 - MMJJ_RS04765 0.22 -2.2
894,828 - MMJJ_RS04765 0.22 -0.5
894,828 - MMJJ_RS04765 0.22 -1.4
894,829 + MMJJ_RS04765 0.22 +0.3
894,829 + MMJJ_RS04765 0.22 -1.2
894,830 - MMJJ_RS04765 0.22 -0.4
894,830 - MMJJ_RS04765 0.22 -0.7
894,830 - MMJJ_RS04765 0.22 -0.4
894,831 + MMJJ_RS04765 0.22 -1.3
894,831 + MMJJ_RS04765 0.22 -0.5
894,846 + MMJJ_RS04765 0.24 -0.7
894,867 - MMJJ_RS04765 0.28 -1.6
894,867 - MMJJ_RS04765 0.28 -1.6
894,867 - MMJJ_RS04765 0.28 -0.6
894,867 - MMJJ_RS04765 0.28 -1.8
894,871 - MMJJ_RS04765 0.28 -2.5
894,871 - MMJJ_RS04765 0.28 +0.5
894,885 - MMJJ_RS04765 0.30 +0.2
894,935 - MMJJ_RS04765 0.38 -2.0
894,949 + MMJJ_RS04765 0.40 -1.4
894,995 - MMJJ_RS04765 0.47 -1.2
895,088 - MMJJ_RS04765 0.60 -3.6
895,089 + MMJJ_RS04765 0.60 -0.6
895,160 - MMJJ_RS04765 0.71 -0.0
895,161 + MMJJ_RS04765 0.71 -0.9
895,185 - MMJJ_RS04765 0.75 -3.0
895,190 + MMJJ_RS04765 0.75 -0.4
895,209 - MMJJ_RS04765 0.78 -0.4
895,277 - MMJJ_RS04765 0.88 -0.5
895,287 + MMJJ_RS04765 0.90 -0.6
895,599 - MMJJ_RS04770 0.19 -0.5
895,677 + MMJJ_RS04770 0.26 -2.7
895,707 - MMJJ_RS04770 0.29 +0.2
896,085 - MMJJ_RS04770 0.61 -2.2
896,086 + MMJJ_RS04770 0.61 -1.8
896,090 - -1.6
896,280 + MMJJ_RS04770 0.78 -2.6
896,310 - MMJJ_RS04770 0.80 -0.8
896,558 - -0.8
896,598 - +0.7
896,610 - -0.6
896,610 - +0.1
896,610 - -0.6
896,610 - -0.6
896,611 + +0.1
896,613 - -0.8
896,613 - +0.4
896,613 - -0.7
896,614 + -0.5
896,614 + +0.5
896,615 - -1.2
896,615 - +0.1
896,615 - -0.8
896,616 + +0.2
896,616 + +0.9
896,616 + -0.4
896,638 + -0.3
896,686 - +1.1
896,686 - -0.4
896,706 - +0.1
896,750 - -0.3
896,751 + -0.8
896,751 + +0.3
896,751 + +0.2
896,752 - +0.8
896,752 - -0.3
896,752 - +0.2
896,781 + -0.3
896,810 - -0.4
896,812 - +0.5
896,812 - +0.1
896,813 + MMJJ_RS04775 0.10 +0.4
896,813 + MMJJ_RS04775 0.10 +0.5
896,813 + MMJJ_RS04775 0.10 -0.5
896,813 + MMJJ_RS04775 0.10 -0.5
896,813 + MMJJ_RS04775 0.10 -0.4
896,813 + MMJJ_RS04775 0.10 +0.9
896,816 - MMJJ_RS04775 0.10 +0.1
896,817 + MMJJ_RS04775 0.11 -0.9
896,817 + MMJJ_RS04775 0.11 -1.0
896,870 - MMJJ_RS04775 0.16 +0.1
896,910 + MMJJ_RS04775 0.21 -0.5
896,921 + MMJJ_RS04775 0.22 +0.2
896,960 + MMJJ_RS04775 0.26 -1.0
897,019 - MMJJ_RS04775 0.33 -0.1
897,067 - MMJJ_RS04775 0.38 +1.1
897,068 + MMJJ_RS04775 0.38 +0.4
897,187 - MMJJ_RS04775 0.51 +0.4
897,188 + MMJJ_RS04775 0.51 -0.8
897,364 - MMJJ_RS04775 0.71 +0.4
897,413 + MMJJ_RS04775 0.76 +0.3
897,413 + MMJJ_RS04775 0.76 +0.6
897,417 + MMJJ_RS04775 0.76 +0.7
897,423 + MMJJ_RS04775 0.77 +0.1
897,423 + MMJJ_RS04775 0.77 -0.0
897,518 + MMJJ_RS04775 0.87 -0.4
897,520 - MMJJ_RS04775 0.88 +0.1
897,538 - MMJJ_RS04775 0.90 +0.2
897,539 + MMJJ_RS04775 0.90 -1.3
897,540 - MMJJ_RS04775 0.90 +0.5

Or see this region's nucleotide sequence