Strain Fitness in Pantoea sp. MT58 around IAI47_09175

Experiment: Defined media control, aerobic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Defined media control, aerobic
1,931,925	+		IAI47_09170	0.30	-1.3
1,931,925	+		IAI47_09170	0.30	-1.0
1,931,926	-		IAI47_09170	0.30	-2.0
1,931,929	+		IAI47_09170	0.30	-4.9
1,931,929	+		IAI47_09170	0.30	-1.5
1,931,929	+		IAI47_09170	0.30	-1.8
1,931,947	+		IAI47_09170	0.32	-0.8
1,931,948	-		IAI47_09170	0.32	-2.0
1,932,125	-		IAI47_09170	0.47	-2.0
1,932,125	-		IAI47_09170	0.47	+0.5
1,932,125	-		IAI47_09170	0.47	-2.0
1,932,125	-		IAI47_09170	0.47	-1.2
1,932,125	-		IAI47_09170	0.47	-2.3
1,932,204	+		IAI47_09170	0.53	+1.0
1,932,204	+		IAI47_09170	0.53	-0.6
1,932,204	+		IAI47_09170	0.53	-0.3
1,932,204	+		IAI47_09170	0.53	-3.0
1,932,204	+		IAI47_09170	0.53	-2.3
1,932,205	-		IAI47_09170	0.54	-0.6
1,932,205	-		IAI47_09170	0.54	-2.3
1,932,205	-		IAI47_09170	0.54	-3.0
1,932,205	-		IAI47_09170	0.54	-1.8
1,932,205	-		IAI47_09170	0.54	-0.6
1,932,205	-		IAI47_09170	0.54	+0.4
1,932,205	-		IAI47_09170	0.54	-2.8
1,932,205	-		IAI47_09170	0.54	-3.5
1,932,219	+		IAI47_09170	0.55	-3.1
1,932,219	+		IAI47_09170	0.55	-1.9
1,932,220	-		IAI47_09170	0.55	+0.4
1,932,220	-		IAI47_09170	0.55	-1.9
1,932,250	+		IAI47_09170	0.57	-2.7
1,932,250	+		IAI47_09170	0.57	+0.4
1,932,251	-		IAI47_09170	0.57	-1.5
1,932,293	+		IAI47_09170	0.61	-1.9
1,932,294	-		IAI47_09170	0.61	-3.1
1,932,294	-		IAI47_09170	0.61	-2.0
1,932,328	+		IAI47_09170	0.64	-4.5
1,932,328	+		IAI47_09170	0.64	-1.2
1,932,328	+		IAI47_09170	0.64	-1.7
1,932,329	-		IAI47_09170	0.64	-1.7
1,932,329	-		IAI47_09170	0.64	-1.5
1,932,329	-		IAI47_09170	0.64	-3.3
1,932,361	+		IAI47_09170	0.67	-2.1
1,932,361	+		IAI47_09170	0.67	-2.7
1,932,361	+		IAI47_09170	0.67	-2.3
1,932,362	-		IAI47_09170	0.67	-3.8
1,932,362	-		IAI47_09170	0.67	-1.7
1,932,363	+		IAI47_09170	0.67	-2.0
1,932,363	+		IAI47_09170	0.67	-2.8
1,932,363	+		IAI47_09170	0.67	-2.9
1,932,363	+		IAI47_09170	0.67	-2.4
1,932,363	+		IAI47_09170	0.67	-0.6
1,932,363	+		IAI47_09170	0.67	-5.1
1,932,363	+		IAI47_09170	0.67	-1.5
1,932,363	+		IAI47_09170	0.67	+0.4
1,932,363	+		IAI47_09170	0.67	-3.9
1,932,363	+		IAI47_09170	0.67	-1.9
1,932,363	+		IAI47_09170	0.67	-2.8
1,932,363	+		IAI47_09170	0.67	-3.0
1,932,364	-		IAI47_09170	0.67	-3.1
1,932,364	-		IAI47_09170	0.67	-2.1
1,932,364	-		IAI47_09170	0.67	-0.8
1,932,364	-		IAI47_09170	0.67	-2.8
1,932,364	-		IAI47_09170	0.67	-2.4
1,932,364	-		IAI47_09170	0.67	+0.4
1,932,364	-		IAI47_09170	0.67	-3.0
1,932,364	-		IAI47_09170	0.67	-0.3
1,932,364	-		IAI47_09170	0.67	-2.0
1,932,364	-				+1.0
1,932,364	-		IAI47_09170	0.67	-2.5
1,932,364	-		IAI47_09170	0.67	-0.3
1,932,364	-		IAI47_09170	0.67	-2.3
1,932,364	-		IAI47_09170	0.67	-2.7
1,932,364	-		IAI47_09170	0.67	-3.2
1,932,540	+		IAI47_09170	0.82	-3.1
1,932,541	-		IAI47_09170	0.82	-1.8
1,932,593	-		IAI47_09170	0.86	-2.3
1,932,593	-		IAI47_09170	0.86	-2.7
1,932,606	+		IAI47_09170	0.87	-1.2
1,932,607	-		IAI47_09170	0.87	-2.0
1,932,607	-		IAI47_09170	0.87	-2.0
1,932,607	-		IAI47_09170	0.87	-3.0
1,932,614	+		IAI47_09170	0.88	-2.6
1,932,614	+		IAI47_09170	0.88	-1.2
1,932,615	-		IAI47_09170	0.88	-4.0
1,932,714	+				-1.7
1,932,714	+				-2.0
1,932,714	+				-2.6
1,932,714	+				-4.7
1,932,714	+				-1.6
1,932,714	+				-3.0
1,932,714	+				-2.3
1,932,715	-				-4.0
1,932,715	-				-2.0
1,932,716	-				-0.0
1,932,750	-				-3.7
1,932,761	+				-1.2
1,932,761	+				-2.1
1,932,761	+				-1.3
1,932,807	+				-0.8
1,932,808	-				+0.5
1,932,808	-				+0.8
1,932,928	+				-3.9
1,932,928	+				-1.3
1,932,928	+				-0.3
1,932,928	+				-3.7
1,932,929	-				-0.6
1,932,929	-				-3.1
1,933,035	+		IAI47_09175	0.17	-3.2
1,933,035	+		IAI47_09175	0.17	-2.9
1,933,036	-		IAI47_09175	0.17	-2.9
1,933,163	+		IAI47_09175	0.26	-1.5
1,933,163	+		IAI47_09175	0.26	-2.1
1,933,163	+		IAI47_09175	0.26	-2.8
1,933,163	+		IAI47_09175	0.26	-2.3
1,933,163	+		IAI47_09175	0.26	-1.9
1,933,163	+		IAI47_09175	0.26	-2.3
1,933,164	-		IAI47_09175	0.27	-2.7
1,933,164	-		IAI47_09175	0.27	-1.6
1,933,164	-		IAI47_09175	0.27	-2.8
1,933,164	-		IAI47_09175	0.27	-3.1
1,933,164	-		IAI47_09175	0.27	-1.5
1,933,164	-		IAI47_09175	0.27	-2.5
1,933,164	-		IAI47_09175	0.27	+2.0
1,933,214	-		IAI47_09175	0.30	-1.7
1,933,243	-		IAI47_09175	0.32	-3.1
1,933,243	-		IAI47_09175	0.32	-3.1
1,933,270	+		IAI47_09175	0.34	-2.7
1,933,270	+		IAI47_09175	0.34	-1.9
1,933,270	+		IAI47_09175	0.34	-4.6
1,933,270	+		IAI47_09175	0.34	-3.6
1,933,271	-		IAI47_09175	0.34	-3.6
1,933,271	-		IAI47_09175	0.34	-2.0
1,933,329	+		IAI47_09175	0.39	-1.6
1,933,330	-		IAI47_09175	0.39	-1.7
1,933,330	-		IAI47_09175	0.39	-3.1
1,933,330	-		IAI47_09175	0.39	-2.2
1,933,330	-		IAI47_09175	0.39	-1.9
1,933,347	+		IAI47_09175	0.40	-2.9
1,933,348	-		IAI47_09175	0.40	-2.2
1,933,377	-		IAI47_09175	0.42	-0.8
1,933,377	-		IAI47_09175	0.42	-1.3
1,933,391	-		IAI47_09175	0.43	-4.4
1,933,495	+		IAI47_09175	0.51	-2.1
1,933,496	-		IAI47_09175	0.51	-0.3
1,933,503	+		IAI47_09175	0.51	-2.7
1,933,503	+		IAI47_09175	0.51	-2.0
1,933,503	+		IAI47_09175	0.51	-2.7
1,933,504	-		IAI47_09175	0.51	-3.3
1,933,504	-		IAI47_09175	0.51	-2.6
1,933,504	-		IAI47_09175	0.51	-4.1
1,933,504	-		IAI47_09175	0.51	-1.3
1,933,510	+		IAI47_09175	0.52	-0.9
1,933,511	-		IAI47_09175	0.52	-2.5
1,933,511	-		IAI47_09175	0.52	-3.0
1,933,585	+		IAI47_09175	0.57	-3.0
1,933,585	+		IAI47_09175	0.57	-2.8
1,933,585	+		IAI47_09175	0.57	-0.8
1,933,586	-		IAI47_09175	0.57	-2.3
1,933,586	-		IAI47_09175	0.57	-2.9
1,933,586	-		IAI47_09175	0.57	-1.3
1,933,612	+		IAI47_09175	0.59	-1.7
1,933,612	+		IAI47_09175	0.59	-3.1
1,933,612	+		IAI47_09175	0.59	-2.0
1,933,613	-		IAI47_09175	0.59	-2.1
1,933,613	-		IAI47_09175	0.59	-2.6
1,933,627	+		IAI47_09175	0.60	-2.3
1,933,628	-		IAI47_09175	0.61	-2.6
1,933,666	+		IAI47_09175	0.63	-3.2
1,933,666	+		IAI47_09175	0.63	-1.3
1,933,725	+		IAI47_09175	0.68	-2.5
1,933,780	-		IAI47_09175	0.72	-3.6
1,933,780	-		IAI47_09175	0.72	-3.3
1,933,780	-		IAI47_09175	0.72	-2.2
1,933,780	-		IAI47_09175	0.72	-1.9
1,933,791	+		IAI47_09175	0.73	-1.5
1,933,791	+		IAI47_09175	0.73	-0.8
1,933,791	+		IAI47_09175	0.73	-3.4
1,933,792	-		IAI47_09175	0.73	-2.9
1,933,792	-		IAI47_09175	0.73	-4.2
1,933,792	-		IAI47_09175	0.73	-2.9
1,933,792	-		IAI47_09175	0.73	-1.0
1,933,792	-		IAI47_09175	0.73	-1.5
1,933,800	+		IAI47_09175	0.73	-0.0
1,933,813	+		IAI47_09175	0.74	-2.3
1,933,888	-		IAI47_09175	0.80	-3.7
1,933,888	-		IAI47_09175	0.80	-4.0
1,933,999	+		IAI47_09175	0.88	-2.6
1,934,011	+		IAI47_09175	0.89	-4.2
1,934,043	+				-3.0
1,934,043	+				-2.5
1,934,043	+				-1.7
1,934,044	-				-3.9
1,934,148	-				-1.0
1,934,168	+				-2.5
1,934,169	-				-3.0
1,934,169	-				-2.4
1,934,201	+				-0.8
1,934,201	+				-2.4
1,934,202	-				-4.0
1,934,202	-				-2.9
1,934,202	-				-3.0
1,934,202	-				-1.9
1,934,202	-				-0.8
1,934,226	+				-0.8
1,934,226	+				-3.0
1,934,227	-				-3.6
1,934,270	-		IAI47_09180	0.10	-2.9
1,934,270	-		IAI47_09180	0.10	+2.0
1,934,274	+		IAI47_09180	0.11	-4.0
1,934,274	+		IAI47_09180	0.11	-3.6
1,934,274	+		IAI47_09180	0.11	-2.8
1,934,275	-		IAI47_09180	0.11	-1.0
1,934,275	-		IAI47_09180	0.11	-3.3
1,934,328	+		IAI47_09180	0.16	-0.5
1,934,329	-		IAI47_09180	0.16	-3.8
1,934,338	+		IAI47_09180	0.17	-2.1
1,934,338	+		IAI47_09180	0.17	-2.2
1,934,339	-		IAI47_09180	0.17	-3.5
1,934,339	-		IAI47_09180	0.17	-1.8
1,934,339	-		IAI47_09180	0.17	-2.9
1,934,339	-		IAI47_09180	0.17	-1.5
1,934,435	+		IAI47_09180	0.27	-2.3
1,934,534	+		IAI47_09180	0.37	-1.9
1,934,535	-		IAI47_09180	0.37	-3.1
1,934,583	+		IAI47_09180	0.42	-3.7
1,934,584	-		IAI47_09180	0.42	-1.7
1,934,584	-		IAI47_09180	0.42	-3.8
1,934,584	-		IAI47_09180	0.42	-3.8
1,934,585	+		IAI47_09180	0.42	-2.4
1,934,585	+		IAI47_09180	0.42	-2.1
1,934,585	+		IAI47_09180	0.42	-0.8
1,934,586	-		IAI47_09180	0.42	-2.8
1,934,586	-		IAI47_09180	0.42	-3.1
1,934,597	-		IAI47_09180	0.43	-1.9
1,934,635	+		IAI47_09180	0.47	+0.7
1,934,643	+		IAI47_09180	0.48	-1.6
1,934,643	+		IAI47_09180	0.48	-0.8
1,934,643	+		IAI47_09180	0.48	-1.8
1,934,643	+		IAI47_09180	0.48	-2.8
1,934,643	+		IAI47_09180	0.48	-0.6
1,934,644	-		IAI47_09180	0.48	-4.0
1,934,644	-		IAI47_09180	0.48	-1.5
1,934,644	-		IAI47_09180	0.48	-2.6
1,934,647	+		IAI47_09180	0.48	-1.4
1,934,647	+		IAI47_09180	0.48	-3.3
1,934,648	-		IAI47_09180	0.48	-1.9
1,934,648	-		IAI47_09180	0.48	-1.6
1,934,653	-		IAI47_09180	0.49	-2.6
1,934,653	-		IAI47_09180	0.49	-2.7
1,934,706	-		IAI47_09180	0.54	-3.2
1,934,772	+		IAI47_09180	0.61	-0.8
1,934,772	+		IAI47_09180	0.61	-2.6
1,934,772	+		IAI47_09180	0.61	-2.7
1,934,773	-		IAI47_09180	0.61	-1.5
1,934,773	-		IAI47_09180	0.61	-3.3
1,934,781	+		IAI47_09180	0.61	-3.7
1,934,781	+		IAI47_09180	0.61	-3.0
1,934,781	+		IAI47_09180	0.61	-2.9
1,934,782	-		IAI47_09180	0.62	-2.2
1,934,782	-		IAI47_09180	0.62	-0.0
1,934,782	-		IAI47_09180	0.62	-1.7
1,934,785	-		IAI47_09180	0.62	-0.3
1,934,785	-		IAI47_09180	0.62	-2.0
1,934,898	+		IAI47_09180	0.73	-3.9
1,934,898	+		IAI47_09180	0.73	-4.4
1,934,899	-		IAI47_09180	0.73	-3.7
1,934,899	-		IAI47_09180	0.73	-2.8
1,934,901	+		IAI47_09180	0.73	-3.4
1,934,901	+		IAI47_09180	0.73	-3.2
1,934,901	+		IAI47_09180	0.73	-1.3
1,934,901	+		IAI47_09180	0.73	-3.1
1,934,901	+		IAI47_09180	0.73	-4.2
1,934,901	+		IAI47_09180	0.73	-1.6
1,934,901	+		IAI47_09180	0.73	-2.5
1,934,902	-		IAI47_09180	0.74	-2.7
1,934,902	-		IAI47_09180	0.74	-3.3
1,934,902	-		IAI47_09180	0.74	-2.2
1,934,911	-		IAI47_09180	0.74	-3.6
1,934,911	-		IAI47_09180	0.74	-2.8
1,934,911	-		IAI47_09180	0.74	-2.1
1,935,031	+		IAI47_09180	0.86	-4.4
1,935,031	+		IAI47_09180	0.86	-3.1
1,935,087	+				-1.2
1,935,087	+				-1.8
1,935,087	+				-1.3
1,935,087	+				-3.7
1,935,087	+				-1.3
1,935,087	+				-1.2
1,935,088	-				-1.9
1,935,088	-				+2.0
1,935,088	-				-2.3
1,935,088	-				-2.4
1,935,140	+				-2.1