Strain Fitness in Pantoea sp. MT58 around IAI47_09160

Experiment: Defined media control, aerobic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntIAI47_09150 and IAI47_09155 are separated by 250 nucleotidesIAI47_09155 and IAI47_09160 are separated by 48 nucleotidesIAI47_09160 and IAI47_09165 are separated by 149 nucleotidesIAI47_09165 and IAI47_09170 overlap by 1 nucleotides IAI47_09150: IAI47_09150 - YkgJ family cysteine cluster protein, at 1,928,949 to 1,929,365 _09150 IAI47_09155: IAI47_09155 - outer membrane protein OmpW, at 1,929,616 to 1,930,251 _09155 IAI47_09160: IAI47_09160 - BON domain-containing protein, at 1,930,300 to 1,930,614 _09160 IAI47_09165: IAI47_09165 - tryptophan synthase subunit alpha, at 1,930,764 to 1,931,567 _09165 IAI47_09170: IAI47_09170 - tryptophan synthase subunit beta, at 1,931,567 to 1,932,757 _09170 Position (kb) 1930 1931Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1929.415 kb on + strandat 1929.415 kb on + strandat 1929.415 kb on + strandat 1929.415 kb on + strandat 1929.415 kb on + strandat 1929.416 kb on - strandat 1929.424 kb on + strandat 1929.424 kb on + strandat 1929.425 kb on - strandat 1929.425 kb on - strandat 1929.591 kb on + strandat 1929.602 kb on + strandat 1929.602 kb on + strandat 1929.603 kb on - strandat 1929.603 kb on - strandat 1929.804 kb on + strand, within IAI47_09155at 1929.804 kb on + strand, within IAI47_09155at 1929.804 kb on + strand, within IAI47_09155at 1929.804 kb on + strand, within IAI47_09155at 1929.805 kb on - strand, within IAI47_09155at 1929.805 kb on - strand, within IAI47_09155at 1929.805 kb on - strand, within IAI47_09155at 1929.805 kb on - strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.808 kb on + strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.809 kb on - strand, within IAI47_09155at 1929.810 kb on + strand, within IAI47_09155at 1929.810 kb on + strand, within IAI47_09155at 1929.810 kb on + strand, within IAI47_09155at 1929.810 kb on + strand, within IAI47_09155at 1929.811 kb on - strand, within IAI47_09155at 1929.864 kb on + strand, within IAI47_09155at 1929.911 kb on + strand, within IAI47_09155at 1929.911 kb on + strand, within IAI47_09155at 1929.911 kb on + strand, within IAI47_09155at 1929.934 kb on + strand, within IAI47_09155at 1929.935 kb on - strand, within IAI47_09155at 1929.937 kb on + strand, within IAI47_09155at 1929.937 kb on + strand, within IAI47_09155at 1929.957 kb on + strand, within IAI47_09155at 1929.958 kb on - strand, within IAI47_09155at 1929.958 kb on - strand, within IAI47_09155at 1929.970 kb on + strand, within IAI47_09155at 1929.970 kb on + strand, within IAI47_09155at 1929.970 kb on + strand, within IAI47_09155at 1929.970 kb on + strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.971 kb on - strand, within IAI47_09155at 1929.981 kb on - strand, within IAI47_09155at 1929.981 kb on - strand, within IAI47_09155at 1929.981 kb on - strand, within IAI47_09155at 1929.984 kb on + strand, within IAI47_09155at 1929.985 kb on - strand, within IAI47_09155at 1929.991 kb on + strand, within IAI47_09155at 1929.992 kb on - strand, within IAI47_09155at 1930.003 kb on + strand, within IAI47_09155at 1930.003 kb on + strand, within IAI47_09155at 1930.003 kb on + strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.004 kb on - strand, within IAI47_09155at 1930.141 kb on + strand, within IAI47_09155at 1930.141 kb on + strand, within IAI47_09155at 1930.141 kb on + strand, within IAI47_09155at 1930.141 kb on + strand, within IAI47_09155at 1930.141 kb on + strand, within IAI47_09155at 1930.142 kb on - strand, within IAI47_09155at 1930.149 kb on + strand, within IAI47_09155at 1930.149 kb on + strand, within IAI47_09155at 1930.150 kb on - strand, within IAI47_09155at 1930.200 kb on + strandat 1930.200 kb on + strandat 1930.200 kb on + strandat 1930.200 kb on + strandat 1930.293 kb on + strandat 1930.294 kb on - strandat 1930.294 kb on - strandat 1930.294 kb on - strandat 1930.302 kb on - strandat 1930.302 kb on - strandat 1930.302 kb on - strandat 1930.360 kb on + strand, within IAI47_09160at 1930.361 kb on - strand, within IAI47_09160at 1930.361 kb on - strand, within IAI47_09160at 1930.371 kb on + strand, within IAI47_09160at 1930.413 kb on + strand, within IAI47_09160at 1930.413 kb on + strand, within IAI47_09160at 1930.413 kb on + strand, within IAI47_09160at 1930.414 kb on - strand, within IAI47_09160at 1930.414 kb on - strand, within IAI47_09160at 1930.419 kb on + strand, within IAI47_09160at 1930.420 kb on - strand, within IAI47_09160at 1930.429 kb on + strand, within IAI47_09160at 1930.429 kb on + strand, within IAI47_09160at 1930.429 kb on + strand, within IAI47_09160at 1930.429 kb on + strand, within IAI47_09160at 1930.429 kb on + strand, within IAI47_09160at 1930.430 kb on - strand, within IAI47_09160at 1930.479 kb on + strand, within IAI47_09160at 1930.479 kb on + strand, within IAI47_09160at 1930.496 kb on - strand, within IAI47_09160at 1930.509 kb on + strand, within IAI47_09160at 1930.509 kb on + strand, within IAI47_09160at 1930.510 kb on - strand, within IAI47_09160at 1930.510 kb on - strand, within IAI47_09160at 1930.510 kb on - strand, within IAI47_09160at 1930.510 kb on - strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.511 kb on + strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.512 kb on - strand, within IAI47_09160at 1930.582 kb on + strand, within IAI47_09160at 1930.701 kb on + strandat 1930.702 kb on - strandat 1930.737 kb on - strandat 1930.746 kb on + strandat 1930.746 kb on + strandat 1930.765 kb on + strandat 1930.960 kb on + strand, within IAI47_09165at 1931.044 kb on + strand, within IAI47_09165at 1931.044 kb on + strand, within IAI47_09165at 1931.044 kb on + strand, within IAI47_09165at 1931.044 kb on + strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.045 kb on - strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.048 kb on + strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.049 kb on - strand, within IAI47_09165at 1931.050 kb on + strand, within IAI47_09165at 1931.050 kb on + strand, within IAI47_09165at 1931.111 kb on + strand, within IAI47_09165at 1931.111 kb on + strand, within IAI47_09165at 1931.111 kb on + strand, within IAI47_09165at 1931.111 kb on + strand, within IAI47_09165at 1931.112 kb on - strand, within IAI47_09165at 1931.112 kb on - strand, within IAI47_09165at 1931.112 kb on - strand, within IAI47_09165at 1931.112 kb on - strand, within IAI47_09165at 1931.112 kb on - strand, within IAI47_09165at 1931.117 kb on + strand, within IAI47_09165at 1931.118 kb on - strand, within IAI47_09165at 1931.118 kb on - strand, within IAI47_09165at 1931.224 kb on + strand, within IAI47_09165at 1931.224 kb on + strand, within IAI47_09165at 1931.263 kb on + strand, within IAI47_09165at 1931.263 kb on + strand, within IAI47_09165at 1931.263 kb on + strand, within IAI47_09165at 1931.263 kb on + strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.264 kb on - strand, within IAI47_09165at 1931.272 kb on - strand, within IAI47_09165at 1931.272 kb on - strand, within IAI47_09165at 1931.306 kb on + strand, within IAI47_09165at 1931.544 kb on - strandat 1931.557 kb on + strandat 1931.557 kb on + strandat 1931.558 kb on - strandat 1931.558 kb on - strandat 1931.611 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Defined media control, aerobic
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1,929,415 + -0.3
1,929,415 + -0.4
1,929,415 + +1.0
1,929,415 + +0.4
1,929,415 + -0.0
1,929,416 - +1.3
1,929,424 + +0.2
1,929,424 + -1.3
1,929,425 - -2.5
1,929,425 - -1.7
1,929,591 + +1.6
1,929,602 + +0.6
1,929,602 + +2.0
1,929,603 - +0.1
1,929,603 - +1.4
1,929,804 + IAI47_09155 0.30 +1.5
1,929,804 + IAI47_09155 0.30 -0.7
1,929,804 + IAI47_09155 0.30 +1.3
1,929,804 + IAI47_09155 0.30 -3.2
1,929,805 - IAI47_09155 0.30 +1.8
1,929,805 - IAI47_09155 0.30 -0.1
1,929,805 - IAI47_09155 0.30 +0.4
1,929,805 - IAI47_09155 0.30 -2.0
1,929,808 + IAI47_09155 0.30 -0.1
1,929,808 + IAI47_09155 0.30 -2.3
1,929,808 + IAI47_09155 0.30 +0.4
1,929,808 + IAI47_09155 0.30 -0.9
1,929,808 + IAI47_09155 0.30 -0.6
1,929,808 + IAI47_09155 0.30 +0.5
1,929,808 + IAI47_09155 0.30 +0.8
1,929,808 + IAI47_09155 0.30 -2.7
1,929,808 + IAI47_09155 0.30 -0.3
1,929,808 + IAI47_09155 0.30 +0.5
1,929,808 + IAI47_09155 0.30 +0.1
1,929,808 + IAI47_09155 0.30 -2.5
1,929,809 - IAI47_09155 0.30 +4.3
1,929,809 - IAI47_09155 0.30 +3.3
1,929,809 - IAI47_09155 0.30 +1.8
1,929,809 - IAI47_09155 0.30 +0.1
1,929,809 - IAI47_09155 0.30 -0.2
1,929,809 - IAI47_09155 0.30 -1.0
1,929,809 - IAI47_09155 0.30 +0.4
1,929,809 - IAI47_09155 0.30 +1.0
1,929,809 - IAI47_09155 0.30 -2.2
1,929,810 + IAI47_09155 0.31 -0.7
1,929,810 + IAI47_09155 0.31 -1.0
1,929,810 + IAI47_09155 0.31 -0.8
1,929,810 + IAI47_09155 0.31 +0.7
1,929,811 - IAI47_09155 0.31 -1.4
1,929,864 + IAI47_09155 0.39 +0.3
1,929,911 + IAI47_09155 0.46 +0.7
1,929,911 + IAI47_09155 0.46 +0.9
1,929,911 + IAI47_09155 0.46 +0.8
1,929,934 + IAI47_09155 0.50 +3.0
1,929,935 - IAI47_09155 0.50 -0.6
1,929,937 + IAI47_09155 0.50 -0.2
1,929,937 + IAI47_09155 0.50 -1.0
1,929,957 + IAI47_09155 0.54 -0.3
1,929,958 - IAI47_09155 0.54 +0.6
1,929,958 - IAI47_09155 0.54 +0.7
1,929,970 + IAI47_09155 0.56 -0.6
1,929,970 + IAI47_09155 0.56 -0.1
1,929,970 + IAI47_09155 0.56 +1.8
1,929,970 + IAI47_09155 0.56 +1.1
1,929,971 - IAI47_09155 0.56 -3.3
1,929,971 - IAI47_09155 0.56 -0.4
1,929,971 - IAI47_09155 0.56 +2.7
1,929,971 - IAI47_09155 0.56 -2.2
1,929,971 - IAI47_09155 0.56 +2.7
1,929,971 - IAI47_09155 0.56 +0.4
1,929,971 - IAI47_09155 0.56 -3.1
1,929,971 - IAI47_09155 0.56 -3.1
1,929,971 - IAI47_09155 0.56 +1.7
1,929,971 - IAI47_09155 0.56 +1.0
1,929,971 - IAI47_09155 0.56 +1.9
1,929,981 - IAI47_09155 0.57 -1.9
1,929,981 - IAI47_09155 0.57 -1.5
1,929,981 - IAI47_09155 0.57 -1.1
1,929,984 + IAI47_09155 0.58 +1.7
1,929,985 - IAI47_09155 0.58 -1.8
1,929,991 + IAI47_09155 0.59 -0.3
1,929,992 - IAI47_09155 0.59 -1.5
1,930,003 + IAI47_09155 0.61 +2.2
1,930,003 + IAI47_09155 0.61 +1.3
1,930,003 + IAI47_09155 0.61 -1.8
1,930,004 - IAI47_09155 0.61 +1.8
1,930,004 - IAI47_09155 0.61 +0.3
1,930,004 - IAI47_09155 0.61 -0.1
1,930,004 - IAI47_09155 0.61 +1.0
1,930,004 - IAI47_09155 0.61 +2.0
1,930,004 - IAI47_09155 0.61 +2.2
1,930,141 + IAI47_09155 0.83 -1.0
1,930,141 + IAI47_09155 0.83 +0.7
1,930,141 + IAI47_09155 0.83 +5.3
1,930,141 + IAI47_09155 0.83 -0.2
1,930,141 + IAI47_09155 0.83 +0.5
1,930,142 - IAI47_09155 0.83 -0.8
1,930,149 + IAI47_09155 0.84 +1.8
1,930,149 + IAI47_09155 0.84 -3.0
1,930,150 - IAI47_09155 0.84 +1.1
1,930,200 + -0.0
1,930,200 + +2.0
1,930,200 + -1.7
1,930,200 + +2.0
1,930,293 + -1.0
1,930,294 - -0.0
1,930,294 - +0.3
1,930,294 - -0.1
1,930,302 - +0.1
1,930,302 - +0.5
1,930,302 - +1.2
1,930,360 + IAI47_09160 0.19 +0.2
1,930,361 - IAI47_09160 0.19 -0.3
1,930,361 - IAI47_09160 0.19 -1.3
1,930,371 + IAI47_09160 0.23 -0.8
1,930,413 + IAI47_09160 0.36 +0.7
1,930,413 + IAI47_09160 0.36 +2.3
1,930,413 + IAI47_09160 0.36 +0.5
1,930,414 - IAI47_09160 0.36 +0.4
1,930,414 - IAI47_09160 0.36 -0.3
1,930,419 + IAI47_09160 0.38 -0.2
1,930,420 - IAI47_09160 0.38 -0.6
1,930,429 + IAI47_09160 0.41 +2.3
1,930,429 + IAI47_09160 0.41 +0.3
1,930,429 + IAI47_09160 0.41 +0.3
1,930,429 + IAI47_09160 0.41 +0.6
1,930,429 + IAI47_09160 0.41 +0.5
1,930,430 - IAI47_09160 0.41 -0.7
1,930,479 + IAI47_09160 0.57 +0.0
1,930,479 + IAI47_09160 0.57 -0.1
1,930,496 - IAI47_09160 0.62 +2.5
1,930,509 + IAI47_09160 0.66 +2.0
1,930,509 + IAI47_09160 0.66 -1.0
1,930,510 - IAI47_09160 0.67 -0.8
1,930,510 - IAI47_09160 0.67 -0.9
1,930,510 - IAI47_09160 0.67 +0.5
1,930,510 - IAI47_09160 0.67 -0.5
1,930,511 + IAI47_09160 0.67 +0.3
1,930,511 + IAI47_09160 0.67 -0.3
1,930,511 + IAI47_09160 0.67 -1.2
1,930,511 + IAI47_09160 0.67 -3.1
1,930,511 + IAI47_09160 0.67 +0.7
1,930,511 + IAI47_09160 0.67 +1.9
1,930,512 - IAI47_09160 0.67 -0.5
1,930,512 - IAI47_09160 0.67 -0.8
1,930,512 - IAI47_09160 0.67 -1.7
1,930,512 - IAI47_09160 0.67 -1.9
1,930,512 - IAI47_09160 0.67 -3.0
1,930,512 - IAI47_09160 0.67 +0.6
1,930,512 - IAI47_09160 0.67 +0.9
1,930,512 - IAI47_09160 0.67 -0.0
1,930,512 - IAI47_09160 0.67 +0.4
1,930,582 + IAI47_09160 0.90 -1.1
1,930,701 + +0.2
1,930,702 - -2.2
1,930,737 - -0.1
1,930,746 + -0.5
1,930,746 + +0.8
1,930,765 + +0.5
1,930,960 + IAI47_09165 0.24 -2.0
1,931,044 + IAI47_09165 0.35 -2.5
1,931,044 + IAI47_09165 0.35 -2.7
1,931,044 + IAI47_09165 0.35 -0.6
1,931,044 + IAI47_09165 0.35 -2.4
1,931,045 - IAI47_09165 0.35 +2.0
1,931,045 - IAI47_09165 0.35 -2.1
1,931,045 - IAI47_09165 0.35 -0.0
1,931,045 - IAI47_09165 0.35 -1.6
1,931,045 - IAI47_09165 0.35 -2.9
1,931,045 - IAI47_09165 0.35 +1.3
1,931,045 - IAI47_09165 0.35 -4.5
1,931,045 - IAI47_09165 0.35 -1.8
1,931,045 - IAI47_09165 0.35 -1.5
1,931,048 + IAI47_09165 0.35 -1.8
1,931,048 + IAI47_09165 0.35 -0.8
1,931,048 + IAI47_09165 0.35 -1.5
1,931,048 + IAI47_09165 0.35 -2.2
1,931,048 + IAI47_09165 0.35 -2.2
1,931,048 + IAI47_09165 0.35 -1.8
1,931,048 + IAI47_09165 0.35 -0.0
1,931,049 - IAI47_09165 0.35 -2.4
1,931,049 - IAI47_09165 0.35 -2.6
1,931,049 - IAI47_09165 0.35 -1.5
1,931,049 - IAI47_09165 0.35 -1.5
1,931,049 - IAI47_09165 0.35 -1.3
1,931,049 - IAI47_09165 0.35 -1.3
1,931,049 - IAI47_09165 0.35 -1.7
1,931,050 + IAI47_09165 0.36 -1.2
1,931,050 + IAI47_09165 0.36 -3.2
1,931,111 + IAI47_09165 0.43 -3.4
1,931,111 + IAI47_09165 0.43 -0.8
1,931,111 + IAI47_09165 0.43 -0.8
1,931,111 + IAI47_09165 0.43 -2.6
1,931,112 - IAI47_09165 0.43 -1.3
1,931,112 - IAI47_09165 0.43 -3.2
1,931,112 - IAI47_09165 0.43 -1.8
1,931,112 - IAI47_09165 0.43 -2.1
1,931,112 - IAI47_09165 0.43 -1.3
1,931,117 + IAI47_09165 0.44 -1.9
1,931,118 - IAI47_09165 0.44 -2.0
1,931,118 - IAI47_09165 0.44 -0.8
1,931,224 + IAI47_09165 0.57 -2.0
1,931,224 + IAI47_09165 0.57 -2.3
1,931,263 + IAI47_09165 0.62 -1.2
1,931,263 + IAI47_09165 0.62 -2.7
1,931,263 + IAI47_09165 0.62 +2.0
1,931,263 + IAI47_09165 0.62 -2.1
1,931,264 - IAI47_09165 0.62 -2.0
1,931,264 - IAI47_09165 0.62 -3.1
1,931,264 - IAI47_09165 0.62 -0.8
1,931,264 - IAI47_09165 0.62 -2.6
1,931,264 - IAI47_09165 0.62 -2.2
1,931,264 - IAI47_09165 0.62 -2.2
1,931,272 - IAI47_09165 0.63 -2.3
1,931,272 - IAI47_09165 0.63 -3.7
1,931,306 + IAI47_09165 0.67 -3.6
1,931,544 - -2.3
1,931,557 + -0.0
1,931,557 + -3.7
1,931,558 - -4.5
1,931,558 - -3.7
1,931,611 + -1.6

Or see this region's nucleotide sequence