Experiment: Defined media control, aerobic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt IAI47_00845 and IAI47_00850 are separated by 10 nucleotides IAI47_00850 and IAI47_00855 are separated by 88 nucleotides
IAI47_00845: IAI47_00845 - HslU--HslV peptidase ATPase subunit, at 177,219 to 178,556
_00845
IAI47_00850: IAI47_00850 - ATP-dependent protease subunit HslV, at 178,567 to 179,097
_00850
IAI47_00855: IAI47_00855 - cell division protein FtsN, at 179,186 to 180,172
_00855
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.647 kb on + strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.648 kb on - strand, within IAI47_00845 at 177.803 kb on + strand, within IAI47_00845 at 177.840 kb on - strand, within IAI47_00845 at 178.046 kb on + strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.047 kb on - strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.195 kb on + strand, within IAI47_00845 at 178.196 kb on - strand, within IAI47_00845 at 178.196 kb on - strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.262 kb on + strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.263 kb on - strand, within IAI47_00845 at 178.285 kb on + strand, within IAI47_00845 at 178.286 kb on - strand, within IAI47_00845 at 178.299 kb on - strand, within IAI47_00845 at 178.473 kb on - strand at 178.508 kb on + strand at 178.509 kb on - strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.556 kb on + strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.557 kb on - strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.560 kb on + strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.561 kb on - strand at 178.562 kb on + strand at 178.563 kb on - strand at 178.563 kb on - strand at 178.575 kb on + strand at 178.575 kb on + strand at 178.576 kb on - strand at 178.582 kb on + strand at 178.583 kb on - strand at 178.596 kb on + strand at 178.596 kb on + strand at 178.609 kb on - strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.613 kb on + strand at 178.614 kb on - strand at 178.614 kb on - strand at 178.624 kb on - strand, within IAI47_00850 at 178.624 kb on - strand, within IAI47_00850 at 178.624 kb on - strand, within IAI47_00850 at 178.678 kb on - strand, within IAI47_00850 at 178.813 kb on + strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.814 kb on - strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.836 kb on + strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.837 kb on - strand, within IAI47_00850 at 178.908 kb on + strand, within IAI47_00850 at 178.909 kb on - strand, within IAI47_00850 at 178.974 kb on + strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.975 kb on - strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.982 kb on + strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.983 kb on - strand, within IAI47_00850 at 178.984 kb on + strand, within IAI47_00850 at 178.984 kb on + strand, within IAI47_00850 at 178.985 kb on - strand, within IAI47_00850 at 179.022 kb on + strand, within IAI47_00850 at 179.023 kb on - strand, within IAI47_00850 at 179.034 kb on + strand, within IAI47_00850 at 179.035 kb on - strand, within IAI47_00850 at 179.035 kb on - strand, within IAI47_00850 at 179.059 kb on + strand at 179.060 kb on - strand at 179.060 kb on - strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.077 kb on + strand at 179.078 kb on - strand at 179.078 kb on - strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.083 kb on + strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.084 kb on - strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.086 kb on + strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.087 kb on - strand at 179.150 kb on + strand at 179.151 kb on - strand at 179.151 kb on - strand at 179.151 kb on - strand at 179.163 kb on - strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.164 kb on + strand at 179.165 kb on - strand at 179.207 kb on + strand at 179.207 kb on + strand at 179.207 kb on + strand at 179.208 kb on - strand at 179.208 kb on - strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.209 kb on + strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.210 kb on - strand at 179.272 kb on + strand at 179.273 kb on - strand at 179.273 kb on - strand at 179.274 kb on + strand at 179.275 kb on - strand at 179.314 kb on + strand, within IAI47_00855 at 179.314 kb on + strand, within IAI47_00855 at 179.314 kb on + strand, within IAI47_00855 at 179.315 kb on - strand, within IAI47_00855 at 179.315 kb on - strand, within IAI47_00855 at 179.343 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.355 kb on - strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.510 kb on + strand, within IAI47_00855 at 179.511 kb on - strand, within IAI47_00855 at 179.511 kb on - strand, within IAI47_00855 at 179.785 kb on + strand, within IAI47_00855 at 179.785 kb on + strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.786 kb on - strand, within IAI47_00855 at 179.888 kb on - strand, within IAI47_00855
Per-strain Table
Position Strand Gene LocusTag Fraction Defined media control, aerobic remove 177,647 + IAI47_00845 0.32 +1.3 177,647 + IAI47_00845 0.32 -1.4 177,647 + IAI47_00845 0.32 -0.6 177,647 + IAI47_00845 0.32 -2.4 177,648 - IAI47_00845 0.32 -0.7 177,648 - IAI47_00845 0.32 +0.2 177,648 - IAI47_00845 0.32 +0.5 177,803 + IAI47_00845 0.44 -2.8 177,840 - IAI47_00845 0.46 -0.2 178,046 + IAI47_00845 0.62 +0.5 178,047 - IAI47_00845 0.62 -0.3 178,047 - IAI47_00845 0.62 -1.2 178,047 - IAI47_00845 0.62 +0.0 178,195 + IAI47_00845 0.73 +0.5 178,195 + IAI47_00845 0.73 -1.3 178,195 + IAI47_00845 0.73 -0.7 178,196 - IAI47_00845 0.73 -1.6 178,196 - IAI47_00845 0.73 +0.6 178,262 + IAI47_00845 0.78 +0.5 178,262 + IAI47_00845 0.78 +0.8 178,262 + IAI47_00845 0.78 +2.2 178,262 + IAI47_00845 0.78 +1.7 178,263 - IAI47_00845 0.78 -0.9 178,263 - IAI47_00845 0.78 -2.0 178,263 - IAI47_00845 0.78 +1.4 178,285 + IAI47_00845 0.80 +0.8 178,286 - IAI47_00845 0.80 +0.9 178,299 - IAI47_00845 0.81 +1.1 178,473 - -2.0 178,508 + -2.2 178,509 - -1.8 178,556 + +0.4 178,556 + +0.2 178,556 + -0.7 178,556 + -1.9 178,556 + -0.6 178,556 + +2.0 178,556 + -1.8 178,556 + +0.4 178,557 - +1.6 178,557 - +0.3 178,557 - -0.5 178,557 - +0.7 178,557 - +0.0 178,557 - -0.0 178,557 - -0.2 178,560 + -0.1 178,560 + -1.2 178,560 + -0.5 178,560 + -0.1 178,560 + -0.1 178,560 + -1.0 178,560 + -0.7 178,560 + -1.5 178,560 + -0.6 178,561 - +2.6 178,561 - +1.0 178,561 - +1.2 178,561 - -2.3 178,561 - -1.0 178,561 - -1.2 178,561 - +1.7 178,561 - +0.8 178,561 - +1.2 178,561 - -1.3 178,561 - +1.6 178,562 + +0.5 178,563 - -0.7 178,563 - +1.1 178,575 + +1.7 178,575 + -1.3 178,576 - -1.9 178,582 + +1.8 178,583 - -2.4 178,596 + -0.3 178,596 + +0.8 178,609 - +0.7 178,613 + -0.2 178,613 + +0.2 178,613 + -2.1 178,613 + -2.5 178,613 + +1.2 178,614 - -2.2 178,614 - -1.1 178,624 - IAI47_00850 0.11 +0.5 178,624 - IAI47_00850 0.11 +0.2 178,624 - IAI47_00850 0.11 +0.5 178,678 - IAI47_00850 0.21 -0.0 178,813 + IAI47_00850 0.46 -0.1 178,814 - IAI47_00850 0.47 +2.1 178,814 - IAI47_00850 0.47 +1.0 178,814 - IAI47_00850 0.47 +1.1 178,836 + IAI47_00850 0.51 -0.8 178,836 + IAI47_00850 0.51 -0.0 178,836 + IAI47_00850 0.51 -0.2 178,837 - IAI47_00850 0.51 +2.1 178,837 - IAI47_00850 0.51 -0.7 178,837 - IAI47_00850 0.51 +1.5 178,837 - IAI47_00850 0.51 +3.1 178,908 + IAI47_00850 0.64 +0.2 178,909 - IAI47_00850 0.64 +0.1 178,974 + IAI47_00850 0.77 -0.4 178,975 - IAI47_00850 0.77 +0.3 178,975 - IAI47_00850 0.77 -2.6 178,975 - IAI47_00850 0.77 +0.3 178,982 + IAI47_00850 0.78 -0.1 178,982 + IAI47_00850 0.78 -0.8 178,982 + IAI47_00850 0.78 +1.1 178,982 + IAI47_00850 0.78 +1.2 178,982 + IAI47_00850 0.78 -1.5 178,983 - IAI47_00850 0.78 +2.0 178,983 - IAI47_00850 0.78 +0.4 178,983 - IAI47_00850 0.78 -0.3 178,983 - IAI47_00850 0.78 +1.1 178,984 + IAI47_00850 0.79 -2.7 178,984 + IAI47_00850 0.79 +1.1 178,985 - IAI47_00850 0.79 +1.1 179,022 + IAI47_00850 0.86 -0.6 179,023 - IAI47_00850 0.86 -0.3 179,034 + IAI47_00850 0.88 -1.3 179,035 - IAI47_00850 0.88 -0.9 179,035 - IAI47_00850 0.88 +2.3 179,059 + +3.1 179,060 - -1.1 179,060 - -2.8 179,077 + +0.5 179,077 + -0.5 179,077 + -2.5 179,077 + -1.3 179,077 + +0.7 179,078 - +0.6 179,078 - +0.8 179,083 + -1.4 179,083 + +0.8 179,083 + -1.2 179,083 + +1.7 179,083 + -0.8 179,083 + +2.2 179,083 + +0.8 179,083 + +0.9 179,084 - +0.2 179,084 - -1.4 179,084 - +2.2 179,084 - -2.2 179,084 - +1.9 179,084 - +1.2 179,084 - -1.1 179,084 - +2.2 179,086 + +0.7 179,086 + +1.3 179,086 + -0.0 179,086 + +2.1 179,086 + -0.8 179,087 - +2.0 179,087 - +2.0 179,087 - +0.2 179,087 - -0.8 179,087 - +0.9 179,087 - +0.1 179,087 - +0.5 179,087 - +0.9 179,087 - -1.2 179,087 - +1.8 179,087 - +0.9 179,087 - +1.9 179,087 - +1.0 179,087 - -1.3 179,087 - -2.2 179,150 + -2.1 179,151 - +0.4 179,151 - +1.5 179,151 - +0.5 179,163 - -0.2 179,164 + +1.3 179,164 + +0.8 179,164 + +1.8 179,164 + +0.5 179,165 - +0.3 179,207 + -0.2 179,207 + +0.9 179,207 + +0.3 179,208 - -1.4 179,208 - +0.9 179,209 + -0.2 179,209 + +0.1 179,209 + +0.7 179,209 + -2.0 179,210 - +0.5 179,210 - +1.0 179,210 - +1.5 179,210 - -0.8 179,272 + -2.7 179,273 - +0.5 179,273 - -0.6 179,274 + -0.3 179,275 - -0.7 179,314 + IAI47_00855 0.13 +1.2 179,314 + IAI47_00855 0.13 +0.4 179,314 + IAI47_00855 0.13 -0.1 179,315 - IAI47_00855 0.13 -2.5 179,315 - IAI47_00855 0.13 +1.5 179,343 - IAI47_00855 0.16 +1.1 179,355 - IAI47_00855 0.17 +2.1 179,355 - IAI47_00855 0.17 +2.0 179,355 - IAI47_00855 0.17 -0.5 179,355 - IAI47_00855 0.17 +0.7 179,510 + IAI47_00855 0.33 +1.2 179,510 + IAI47_00855 0.33 +0.9 179,510 + IAI47_00855 0.33 -3.5 179,511 - IAI47_00855 0.33 -0.0 179,511 - IAI47_00855 0.33 +0.3 179,785 + IAI47_00855 0.61 -0.8 179,785 + IAI47_00855 0.61 -0.8 179,786 - IAI47_00855 0.61 +0.9 179,786 - IAI47_00855 0.61 +0.2 179,786 - IAI47_00855 0.61 +0.9 179,888 - IAI47_00855 0.71 +0.9
Or see this region's nucleotide sequence