Experiment: Cobalt chloride 0.2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HSERO_RS01990 and HSERO_RS01995 are separated by 26 nucleotides HSERO_RS01995 and HSERO_RS02000 are separated by 220 nucleotides HSERO_RS02000 and HSERO_RS02005 are separated by 133 nucleotides HSERO_RS02005 and HSERO_RS02010 are separated by 75 nucleotides
HSERO_RS01990: HSERO_RS01990 - shikimate 5-dehydrogenase, at 436,239 to 437,054
_RS01990
HSERO_RS01995: HSERO_RS01995 - peptidoglycan transglycosylase, at 437,081 to 437,788
_RS01995
HSERO_RS02000: HSERO_RS02000 - magnesium transporter, at 438,009 to 438,974
_RS02000
HSERO_RS02005: HSERO_RS02005 - membrane protein, at 439,108 to 439,578
_RS02005
HSERO_RS02010: HSERO_RS02010 - anhydro-N-acetylmuramic acid kinase, at 439,654 to 440,781
_RS02010
Position (kb) 438
439 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 437.112 kb on - strand at 437.117 kb on + strand at 437.117 kb on + strand at 437.132 kb on - strand at 437.167 kb on + strand, within HSERO_RS01995 at 437.167 kb on + strand, within HSERO_RS01995 at 437.175 kb on - strand, within HSERO_RS01995 at 437.651 kb on - strand, within HSERO_RS01995 at 437.817 kb on - strand at 438.073 kb on + strand at 438.100 kb on - strand at 438.105 kb on - strand at 438.425 kb on + strand, within HSERO_RS02000 at 438.540 kb on - strand, within HSERO_RS02000 at 438.548 kb on - strand, within HSERO_RS02000 at 438.646 kb on + strand, within HSERO_RS02000 at 438.646 kb on + strand, within HSERO_RS02000 at 438.656 kb on + strand, within HSERO_RS02000 at 438.980 kb on + strand at 438.988 kb on - strand at 439.375 kb on + strand, within HSERO_RS02005 at 439.388 kb on - strand, within HSERO_RS02005 at 439.455 kb on + strand, within HSERO_RS02005 at 439.500 kb on - strand, within HSERO_RS02005 at 439.580 kb on + strand at 439.831 kb on + strand, within HSERO_RS02010 at 439.888 kb on + strand, within HSERO_RS02010 at 439.914 kb on + strand, within HSERO_RS02010 at 439.951 kb on + strand, within HSERO_RS02010 at 439.968 kb on - strand, within HSERO_RS02010 at 439.968 kb on - strand, within HSERO_RS02010
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.2 mM remove 437,112 - -0.1 437,117 + +0.3 437,117 + +1.3 437,132 - -2.0 437,167 + HSERO_RS01995 0.12 +0.2 437,167 + HSERO_RS01995 0.12 +0.8 437,175 - HSERO_RS01995 0.13 -0.9 437,651 - HSERO_RS01995 0.81 -0.6 437,817 - -1.5 438,073 + +3.7 438,100 - +4.6 438,105 - +4.8 438,425 + HSERO_RS02000 0.43 +3.6 438,540 - HSERO_RS02000 0.55 +3.0 438,548 - HSERO_RS02000 0.56 +4.2 438,646 + HSERO_RS02000 0.66 +4.3 438,646 + HSERO_RS02000 0.66 +4.1 438,656 + HSERO_RS02000 0.67 +4.7 438,980 + -0.7 438,988 - +0.3 439,375 + HSERO_RS02005 0.57 +1.9 439,388 - HSERO_RS02005 0.59 +1.0 439,455 + HSERO_RS02005 0.74 +0.0 439,500 - HSERO_RS02005 0.83 +1.2 439,580 + +0.4 439,831 + HSERO_RS02010 0.16 +0.0 439,888 + HSERO_RS02010 0.21 -0.3 439,914 + HSERO_RS02010 0.23 +0.3 439,951 + HSERO_RS02010 0.26 -1.3 439,968 - HSERO_RS02010 0.28 -0.2 439,968 - HSERO_RS02010 0.28 +0.3
Or see this region's nucleotide sequence