Strain Fitness in Pedobacter sp. GW460-11-11-14-LB5 around CA265_RS00325

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA265_RS00320 and CA265_RS00325 are separated by 231 nucleotidesCA265_RS00325 and CA265_RS00330 are separated by 93 nucleotidesCA265_RS00330 and CA265_RS00335 are separated by 89 nucleotides CA265_RS00320: CA265_RS00320 - histidine kinase, at 73,692 to 74,753 _RS00320 CA265_RS00325: CA265_RS00325 - hypothetical protein, at 74,985 to 75,440 _RS00325 CA265_RS00330: CA265_RS00330 - helix-turn-helix transcriptional regulator, at 75,534 to 76,295 _RS00330 CA265_RS00335: CA265_RS00335 - hypothetical protein, at 76,385 to 76,576 _RS00335 Position (kb) 74 75 76Strain fitness (log2 ratio) -2 -1 0 1 2at 74.037 kb on + strand, within CA265_RS00320at 74.056 kb on + strand, within CA265_RS00320at 74.057 kb on - strand, within CA265_RS00320at 74.057 kb on - strand, within CA265_RS00320at 74.060 kb on + strand, within CA265_RS00320at 74.060 kb on + strand, within CA265_RS00320at 74.120 kb on + strand, within CA265_RS00320at 74.120 kb on + strand, within CA265_RS00320at 74.121 kb on - strand, within CA265_RS00320at 74.121 kb on - strand, within CA265_RS00320at 74.121 kb on - strand, within CA265_RS00320at 74.121 kb on - strand, within CA265_RS00320at 74.122 kb on + strand, within CA265_RS00320at 74.122 kb on + strand, within CA265_RS00320at 74.123 kb on - strand, within CA265_RS00320at 74.191 kb on + strand, within CA265_RS00320at 74.250 kb on - strand, within CA265_RS00320at 74.278 kb on - strand, within CA265_RS00320at 74.291 kb on + strand, within CA265_RS00320at 74.325 kb on + strand, within CA265_RS00320at 74.337 kb on + strand, within CA265_RS00320at 74.352 kb on + strand, within CA265_RS00320at 74.358 kb on - strand, within CA265_RS00320at 74.371 kb on + strand, within CA265_RS00320at 74.377 kb on - strand, within CA265_RS00320at 74.377 kb on - strand, within CA265_RS00320at 74.413 kb on - strand, within CA265_RS00320at 74.419 kb on + strand, within CA265_RS00320at 74.419 kb on + strand, within CA265_RS00320at 74.420 kb on - strand, within CA265_RS00320at 74.425 kb on + strand, within CA265_RS00320at 74.427 kb on + strand, within CA265_RS00320at 74.427 kb on + strand, within CA265_RS00320at 74.432 kb on - strand, within CA265_RS00320at 74.434 kb on + strand, within CA265_RS00320at 74.470 kb on - strand, within CA265_RS00320at 74.482 kb on - strand, within CA265_RS00320at 74.579 kb on + strand, within CA265_RS00320at 74.602 kb on + strand, within CA265_RS00320at 74.629 kb on + strand, within CA265_RS00320at 74.645 kb on + strand, within CA265_RS00320at 74.762 kb on - strandat 74.778 kb on + strandat 74.778 kb on + strandat 74.850 kb on - strandat 74.854 kb on - strandat 74.865 kb on - strandat 74.866 kb on + strandat 74.872 kb on + strandat 74.911 kb on + strandat 74.939 kb on + strandat 74.939 kb on + strandat 74.942 kb on + strandat 75.018 kb on - strandat 75.047 kb on + strand, within CA265_RS00325at 75.149 kb on - strand, within CA265_RS00325at 75.149 kb on - strand, within CA265_RS00325at 75.202 kb on - strand, within CA265_RS00325at 75.227 kb on - strand, within CA265_RS00325at 75.260 kb on + strand, within CA265_RS00325at 75.331 kb on + strand, within CA265_RS00325at 75.387 kb on + strand, within CA265_RS00325at 75.430 kb on + strandat 75.431 kb on - strandat 75.449 kb on + strandat 75.531 kb on + strandat 75.532 kb on - strandat 75.535 kb on + strandat 75.535 kb on + strandat 75.535 kb on + strandat 75.581 kb on + strandat 75.582 kb on - strandat 75.582 kb on - strandat 75.620 kb on - strand, within CA265_RS00330at 75.803 kb on + strand, within CA265_RS00330at 75.804 kb on - strand, within CA265_RS00330at 75.804 kb on - strand, within CA265_RS00330at 75.839 kb on + strand, within CA265_RS00330at 75.840 kb on - strand, within CA265_RS00330at 75.840 kb on - strand, within CA265_RS00330at 75.914 kb on + strand, within CA265_RS00330at 75.948 kb on - strand, within CA265_RS00330at 75.953 kb on + strand, within CA265_RS00330at 76.024 kb on - strand, within CA265_RS00330at 76.080 kb on + strand, within CA265_RS00330at 76.080 kb on + strand, within CA265_RS00330at 76.081 kb on - strand, within CA265_RS00330at 76.104 kb on + strand, within CA265_RS00330at 76.162 kb on + strand, within CA265_RS00330at 76.162 kb on + strand, within CA265_RS00330at 76.165 kb on - strand, within CA265_RS00330at 76.413 kb on + strand, within CA265_RS00335at 76.420 kb on - strand, within CA265_RS00335

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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74,037 + CA265_RS00320 0.32 -0.4
74,056 + CA265_RS00320 0.34 +0.7
74,057 - CA265_RS00320 0.34 +0.5
74,057 - CA265_RS00320 0.34 -0.4
74,060 + CA265_RS00320 0.35 +1.4
74,060 + CA265_RS00320 0.35 +0.9
74,120 + CA265_RS00320 0.40 -0.5
74,120 + CA265_RS00320 0.40 +0.2
74,121 - CA265_RS00320 0.40 -0.6
74,121 - CA265_RS00320 0.40 +0.1
74,121 - CA265_RS00320 0.40 -0.2
74,121 - CA265_RS00320 0.40 -0.3
74,122 + CA265_RS00320 0.40 +0.2
74,122 + CA265_RS00320 0.40 -0.3
74,123 - CA265_RS00320 0.41 -0.3
74,191 + CA265_RS00320 0.47 +0.2
74,250 - CA265_RS00320 0.53 +0.1
74,278 - CA265_RS00320 0.55 +0.0
74,291 + CA265_RS00320 0.56 -0.1
74,325 + CA265_RS00320 0.60 -0.2
74,337 + CA265_RS00320 0.61 +0.2
74,352 + CA265_RS00320 0.62 +0.2
74,358 - CA265_RS00320 0.63 +0.1
74,371 + CA265_RS00320 0.64 -0.1
74,377 - CA265_RS00320 0.65 +0.1
74,377 - CA265_RS00320 0.65 -0.6
74,413 - CA265_RS00320 0.68 +0.1
74,419 + CA265_RS00320 0.68 +0.3
74,419 + CA265_RS00320 0.68 -0.7
74,420 - CA265_RS00320 0.69 -1.0
74,425 + CA265_RS00320 0.69 -0.3
74,427 + CA265_RS00320 0.69 -0.0
74,427 + CA265_RS00320 0.69 +0.1
74,432 - CA265_RS00320 0.70 +0.2
74,434 + CA265_RS00320 0.70 -0.4
74,470 - CA265_RS00320 0.73 -0.4
74,482 - CA265_RS00320 0.74 -0.2
74,579 + CA265_RS00320 0.84 +1.2
74,602 + CA265_RS00320 0.86 +0.1
74,629 + CA265_RS00320 0.88 +0.7
74,645 + CA265_RS00320 0.90 -1.6
74,762 - -0.2
74,778 + -0.5
74,778 + -0.1
74,850 - +0.4
74,854 - -0.2
74,865 - -0.8
74,866 + +0.1
74,872 + +0.8
74,911 + -0.0
74,939 + -0.0
74,939 + -0.9
74,942 + +0.3
75,018 - -0.3
75,047 + CA265_RS00325 0.14 -0.2
75,149 - CA265_RS00325 0.36 -1.6
75,149 - CA265_RS00325 0.36 -0.6
75,202 - CA265_RS00325 0.48 -0.7
75,227 - CA265_RS00325 0.53 -0.5
75,260 + CA265_RS00325 0.60 -0.7
75,331 + CA265_RS00325 0.76 -0.1
75,387 + CA265_RS00325 0.88 -1.6
75,430 + -2.0
75,431 - -0.6
75,449 + -1.0
75,531 + -0.1
75,532 - +0.8
75,535 + -0.1
75,535 + +0.6
75,535 + -0.3
75,581 + -0.2
75,582 - +0.0
75,582 - -0.1
75,620 - CA265_RS00330 0.11 +0.1
75,803 + CA265_RS00330 0.35 -0.5
75,804 - CA265_RS00330 0.35 -0.0
75,804 - CA265_RS00330 0.35 -0.6
75,839 + CA265_RS00330 0.40 +1.9
75,840 - CA265_RS00330 0.40 -2.5
75,840 - CA265_RS00330 0.40 +0.4
75,914 + CA265_RS00330 0.50 +0.1
75,948 - CA265_RS00330 0.54 -1.6
75,953 + CA265_RS00330 0.55 +0.4
76,024 - CA265_RS00330 0.64 -0.9
76,080 + CA265_RS00330 0.72 -0.6
76,080 + CA265_RS00330 0.72 -0.2
76,081 - CA265_RS00330 0.72 +2.2
76,104 + CA265_RS00330 0.75 +0.3
76,162 + CA265_RS00330 0.82 +0.5
76,162 + CA265_RS00330 0.82 -0.0
76,165 - CA265_RS00330 0.83 -0.0
76,413 + CA265_RS00335 0.15 +2.0
76,420 - CA265_RS00335 0.18 -0.5

Or see this region's nucleotide sequence