Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS27645 and BPHYT_RS27650 are separated by 58 nucleotides BPHYT_RS27650 and BPHYT_RS27655 are separated by 436 nucleotides BPHYT_RS27655 and BPHYT_RS27660 are separated by 110 nucleotides BPHYT_RS27660 and BPHYT_RS27665 are separated by 22 nucleotides
BPHYT_RS27645: BPHYT_RS27645 - universal stress protein UspA, at 1,770,518 to 1,770,976
_RS27645
BPHYT_RS27650: BPHYT_RS27650 - hypothetical protein, at 1,771,035 to 1,771,382
_RS27650
BPHYT_RS27655: BPHYT_RS27655 - potassium transporter, at 1,771,819 to 1,772,652
_RS27655
BPHYT_RS27660: BPHYT_RS27660 - hypothetical protein, at 1,772,763 to 1,773,203
_RS27660
BPHYT_RS27665: BPHYT_RS27665 - flavodoxin, at 1,773,226 to 1,773,738
_RS27665
Position (kb) 1771
1772
1773 Strain fitness (log2 ratio) -1
0
1 at 1770.981 kb on - strand at 1771.459 kb on + strand at 1772.330 kb on - strand, within BPHYT_RS27655 at 1772.468 kb on + strand, within BPHYT_RS27655 at 1772.833 kb on + strand, within BPHYT_RS27660 at 1772.833 kb on + strand, within BPHYT_RS27660 at 1772.864 kb on - strand, within BPHYT_RS27660 at 1773.461 kb on + strand, within BPHYT_RS27665 at 1773.524 kb on + strand, within BPHYT_RS27665
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 1,770,981 - +0.4 1,771,459 + -0.2 1,772,330 - BPHYT_RS27655 0.61 -0.7 1,772,468 + BPHYT_RS27655 0.78 -0.7 1,772,833 + BPHYT_RS27660 0.16 -0.2 1,772,833 + BPHYT_RS27660 0.16 +1.6 1,772,864 - BPHYT_RS27660 0.23 -0.4 1,773,461 + BPHYT_RS27665 0.46 -0.8 1,773,524 + BPHYT_RS27665 0.58 -0.7
Or see this region's nucleotide sequence