Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26560

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26555 and BPHYT_RS26560 are separated by 147 nucleotidesBPHYT_RS26560 and BPHYT_RS26565 overlap by 4 nucleotidesBPHYT_RS26565 and BPHYT_RS26570 are separated by 57 nucleotides BPHYT_RS26555: BPHYT_RS26555 - multidrug MFS transporter, at 1,527,038 to 1,528,201 _RS26555 BPHYT_RS26560: BPHYT_RS26560 - murein hydrolase transporter LrgA, at 1,528,349 to 1,528,720 _RS26560 BPHYT_RS26565: BPHYT_RS26565 - membrane protein, at 1,528,717 to 1,529,457 _RS26565 BPHYT_RS26570: BPHYT_RS26570 - 5'-nucleotidase, at 1,529,515 to 1,530,294 _RS26570 Position (kb) 1528 1529Strain fitness (log2 ratio) -1 0 1at 1527.585 kb on + strand, within BPHYT_RS26555at 1527.700 kb on - strand, within BPHYT_RS26555at 1528.050 kb on + strand, within BPHYT_RS26555at 1528.244 kb on - strandat 1528.308 kb on - strandat 1528.539 kb on + strand, within BPHYT_RS26560at 1529.226 kb on - strand, within BPHYT_RS26565at 1529.480 kb on + strandat 1529.481 kb on - strandat 1529.524 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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1,527,585 + BPHYT_RS26555 0.47 +0.8
1,527,700 - BPHYT_RS26555 0.57 -0.2
1,528,050 + BPHYT_RS26555 0.87 -0.6
1,528,244 - +0.0
1,528,308 - -0.0
1,528,539 + BPHYT_RS26560 0.51 -0.7
1,529,226 - BPHYT_RS26565 0.69 +1.1
1,529,480 + -0.3
1,529,481 - +0.4
1,529,524 + -0.0

Or see this region's nucleotide sequence