Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23390

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23385 and BPHYT_RS23390 are separated by 518 nucleotidesBPHYT_RS23390 and BPHYT_RS23395 are separated by 312 nucleotides BPHYT_RS23385: BPHYT_RS23385 - group 1 glycosyl transferase, at 807,719 to 808,894 _RS23385 BPHYT_RS23390: BPHYT_RS23390 - hypothetical protein, at 809,413 to 810,423 _RS23390 BPHYT_RS23395: BPHYT_RS23395 - glycosyl transferase, at 810,736 to 811,872 _RS23395 Position (kb) 809 810 811Strain fitness (log2 ratio) -1 0 1at 808.627 kb on - strand, within BPHYT_RS23385at 809.518 kb on + strand, within BPHYT_RS23390at 809.905 kb on - strand, within BPHYT_RS23390at 811.394 kb on - strand, within BPHYT_RS23395

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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808,627 - BPHYT_RS23385 0.77 +0.3
809,518 + BPHYT_RS23390 0.10 -0.0
809,905 - BPHYT_RS23390 0.49 -1.4
811,394 - BPHYT_RS23395 0.58 -0.1

Or see this region's nucleotide sequence