Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16345 and BPHYT_RS16350 overlap by 4 nucleotides BPHYT_RS16350 and BPHYT_RS16355 are separated by 149 nucleotides BPHYT_RS16355 and BPHYT_RS16360 are separated by 7 nucleotides
BPHYT_RS16345: BPHYT_RS16345 - succinyl-CoA ligase [ADP-forming] subunit beta, at 3,709,039 to 3,710,208
_RS16345
BPHYT_RS16350: BPHYT_RS16350 - hypothetical protein, at 3,710,205 to 3,710,945
_RS16350
BPHYT_RS16355: BPHYT_RS16355 - recombination protein RecX, at 3,711,095 to 3,711,802
_RS16355
BPHYT_RS16360: BPHYT_RS16360 - recombinase RecA, at 3,711,810 to 3,712,886
_RS16360
Position (kb)
3710
3711 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3709.454 kb on + strand, within BPHYT_RS16345 at 3709.455 kb on - strand, within BPHYT_RS16345 at 3709.455 kb on - strand, within BPHYT_RS16345 at 3709.655 kb on + strand, within BPHYT_RS16345 at 3709.656 kb on - strand, within BPHYT_RS16345 at 3709.883 kb on + strand, within BPHYT_RS16345 at 3709.884 kb on - strand, within BPHYT_RS16345 at 3709.884 kb on - strand, within BPHYT_RS16345 at 3709.884 kb on - strand, within BPHYT_RS16345 at 3710.192 kb on + strand at 3710.193 kb on - strand at 3710.339 kb on + strand, within BPHYT_RS16350 at 3710.340 kb on - strand, within BPHYT_RS16350 at 3710.340 kb on - strand, within BPHYT_RS16350 at 3710.356 kb on + strand, within BPHYT_RS16350 at 3710.357 kb on - strand, within BPHYT_RS16350 at 3710.435 kb on + strand, within BPHYT_RS16350 at 3710.436 kb on - strand, within BPHYT_RS16350 at 3710.666 kb on - strand at 3710.881 kb on + strand at 3710.882 kb on - strand at 3710.882 kb on - strand at 3710.882 kb on - strand at 3710.882 kb on - strand at 3710.989 kb on + strand at 3710.989 kb on + strand at 3710.989 kb on + strand at 3710.990 kb on - strand at 3710.990 kb on - strand at 3710.996 kb on + strand at 3711.054 kb on + strand at 3711.054 kb on + strand at 3711.054 kb on + strand at 3711.054 kb on + strand at 3711.054 kb on + strand at 3711.055 kb on - strand at 3711.055 kb on - strand at 3711.055 kb on - strand at 3711.097 kb on - strand at 3711.320 kb on + strand, within BPHYT_RS16355 at 3711.321 kb on - strand, within BPHYT_RS16355 at 3711.495 kb on + strand, within BPHYT_RS16355 at 3711.510 kb on - strand, within BPHYT_RS16355 at 3711.534 kb on - strand, within BPHYT_RS16355 at 3711.616 kb on - strand, within BPHYT_RS16355 at 3711.797 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 3,709,454 + BPHYT_RS16345 0.35 -0.3 3,709,455 - BPHYT_RS16345 0.36 -0.4 3,709,455 - BPHYT_RS16345 0.36 -0.9 3,709,655 + BPHYT_RS16345 0.53 -1.4 3,709,656 - BPHYT_RS16345 0.53 +0.1 3,709,883 + BPHYT_RS16345 0.72 -0.5 3,709,884 - BPHYT_RS16345 0.72 -0.6 3,709,884 - BPHYT_RS16345 0.72 -0.2 3,709,884 - BPHYT_RS16345 0.72 -1.3 3,710,192 + -0.4 3,710,193 - -0.4 3,710,339 + BPHYT_RS16350 0.18 -3.7 3,710,340 - BPHYT_RS16350 0.18 -0.7 3,710,340 - BPHYT_RS16350 0.18 -0.4 3,710,356 + BPHYT_RS16350 0.20 -2.1 3,710,357 - BPHYT_RS16350 0.21 -0.8 3,710,435 + BPHYT_RS16350 0.31 -2.2 3,710,436 - BPHYT_RS16350 0.31 -0.1 3,710,666 - -0.1 3,710,881 + -0.0 3,710,882 - +0.2 3,710,882 - -0.2 3,710,882 - +0.0 3,710,882 - -0.2 3,710,989 + +0.1 3,710,989 + -0.2 3,710,989 + +1.3 3,710,990 - -0.2 3,710,990 - +0.5 3,710,996 + +0.9 3,711,054 + -0.8 3,711,054 + +0.2 3,711,054 + +0.2 3,711,054 + +0.2 3,711,054 + +0.4 3,711,055 - -0.2 3,711,055 - +0.2 3,711,055 - -0.2 3,711,097 - +0.1 3,711,320 + BPHYT_RS16355 0.32 +0.3 3,711,321 - BPHYT_RS16355 0.32 +0.4 3,711,495 + BPHYT_RS16355 0.56 +0.1 3,711,510 - BPHYT_RS16355 0.59 +0.2 3,711,534 - BPHYT_RS16355 0.62 +0.5 3,711,616 - BPHYT_RS16355 0.74 -0.1 3,711,797 + -0.4
Or see this region's nucleotide sequence