Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS16350

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS16345 and BPHYT_RS16350 overlap by 4 nucleotidesBPHYT_RS16350 and BPHYT_RS16355 are separated by 149 nucleotidesBPHYT_RS16355 and BPHYT_RS16360 are separated by 7 nucleotides BPHYT_RS16345: BPHYT_RS16345 - succinyl-CoA ligase [ADP-forming] subunit beta, at 3,709,039 to 3,710,208 _RS16345 BPHYT_RS16350: BPHYT_RS16350 - hypothetical protein, at 3,710,205 to 3,710,945 _RS16350 BPHYT_RS16355: BPHYT_RS16355 - recombination protein RecX, at 3,711,095 to 3,711,802 _RS16355 BPHYT_RS16360: BPHYT_RS16360 - recombinase RecA, at 3,711,810 to 3,712,886 _RS16360 Position (kb) 3710 3711Strain fitness (log2 ratio) -3 -2 -1 0 1at 3709.454 kb on + strand, within BPHYT_RS16345at 3709.455 kb on - strand, within BPHYT_RS16345at 3709.455 kb on - strand, within BPHYT_RS16345at 3709.655 kb on + strand, within BPHYT_RS16345at 3709.656 kb on - strand, within BPHYT_RS16345at 3709.883 kb on + strand, within BPHYT_RS16345at 3709.884 kb on - strand, within BPHYT_RS16345at 3709.884 kb on - strand, within BPHYT_RS16345at 3709.884 kb on - strand, within BPHYT_RS16345at 3710.192 kb on + strandat 3710.193 kb on - strandat 3710.339 kb on + strand, within BPHYT_RS16350at 3710.340 kb on - strand, within BPHYT_RS16350at 3710.340 kb on - strand, within BPHYT_RS16350at 3710.356 kb on + strand, within BPHYT_RS16350at 3710.357 kb on - strand, within BPHYT_RS16350at 3710.435 kb on + strand, within BPHYT_RS16350at 3710.436 kb on - strand, within BPHYT_RS16350at 3710.666 kb on - strandat 3710.881 kb on + strandat 3710.882 kb on - strandat 3710.882 kb on - strandat 3710.882 kb on - strandat 3710.882 kb on - strandat 3710.989 kb on + strandat 3710.989 kb on + strandat 3710.989 kb on + strandat 3710.990 kb on - strandat 3710.990 kb on - strandat 3710.996 kb on + strandat 3711.054 kb on + strandat 3711.054 kb on + strandat 3711.054 kb on + strandat 3711.054 kb on + strandat 3711.054 kb on + strandat 3711.055 kb on - strandat 3711.055 kb on - strandat 3711.055 kb on - strandat 3711.097 kb on - strandat 3711.320 kb on + strand, within BPHYT_RS16355at 3711.321 kb on - strand, within BPHYT_RS16355at 3711.495 kb on + strand, within BPHYT_RS16355at 3711.510 kb on - strand, within BPHYT_RS16355at 3711.534 kb on - strand, within BPHYT_RS16355at 3711.616 kb on - strand, within BPHYT_RS16355at 3711.797 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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3,709,454 + BPHYT_RS16345 0.35 -0.3
3,709,455 - BPHYT_RS16345 0.36 -0.4
3,709,455 - BPHYT_RS16345 0.36 -0.9
3,709,655 + BPHYT_RS16345 0.53 -1.4
3,709,656 - BPHYT_RS16345 0.53 +0.1
3,709,883 + BPHYT_RS16345 0.72 -0.5
3,709,884 - BPHYT_RS16345 0.72 -0.6
3,709,884 - BPHYT_RS16345 0.72 -0.2
3,709,884 - BPHYT_RS16345 0.72 -1.3
3,710,192 + -0.4
3,710,193 - -0.4
3,710,339 + BPHYT_RS16350 0.18 -3.7
3,710,340 - BPHYT_RS16350 0.18 -0.7
3,710,340 - BPHYT_RS16350 0.18 -0.4
3,710,356 + BPHYT_RS16350 0.20 -2.1
3,710,357 - BPHYT_RS16350 0.21 -0.8
3,710,435 + BPHYT_RS16350 0.31 -2.2
3,710,436 - BPHYT_RS16350 0.31 -0.1
3,710,666 - -0.1
3,710,881 + -0.0
3,710,882 - +0.2
3,710,882 - -0.2
3,710,882 - +0.0
3,710,882 - -0.2
3,710,989 + +0.1
3,710,989 + -0.2
3,710,989 + +1.3
3,710,990 - -0.2
3,710,990 - +0.5
3,710,996 + +0.9
3,711,054 + -0.8
3,711,054 + +0.2
3,711,054 + +0.2
3,711,054 + +0.2
3,711,054 + +0.4
3,711,055 - -0.2
3,711,055 - +0.2
3,711,055 - -0.2
3,711,097 - +0.1
3,711,320 + BPHYT_RS16355 0.32 +0.3
3,711,321 - BPHYT_RS16355 0.32 +0.4
3,711,495 + BPHYT_RS16355 0.56 +0.1
3,711,510 - BPHYT_RS16355 0.59 +0.2
3,711,534 - BPHYT_RS16355 0.62 +0.5
3,711,616 - BPHYT_RS16355 0.74 -0.1
3,711,797 + -0.4

Or see this region's nucleotide sequence