Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS10230

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS10215 and BPHYT_RS10220 are separated by 166 nucleotidesBPHYT_RS10220 and BPHYT_RS10225 are separated by 62 nucleotidesBPHYT_RS10225 and BPHYT_RS10230 are separated by 264 nucleotidesBPHYT_RS10230 and BPHYT_RS10240 are separated by 875 nucleotides BPHYT_RS10215: BPHYT_RS10215 - sulfate transporter, at 2,326,484 to 2,326,954 _RS10215 BPHYT_RS10220: BPHYT_RS10220 - hypothetical protein, at 2,327,121 to 2,327,330 _RS10220 BPHYT_RS10225: BPHYT_RS10225 - GYD family protein, at 2,327,393 to 2,327,686 _RS10225 BPHYT_RS10230: BPHYT_RS10230 - hypothetical protein, at 2,327,951 to 2,328,382 _RS10230 BPHYT_RS10240: BPHYT_RS10240 - translation initiation inhibitor, at 2,329,258 to 2,329,551 _RS10240 Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -2 -1 0 1at 2327.247 kb on - strand, within BPHYT_RS10220at 2328.243 kb on + strand, within BPHYT_RS10230at 2328.246 kb on + strand, within BPHYT_RS10230at 2329.178 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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2,327,247 - BPHYT_RS10220 0.60 -1.8
2,328,243 + BPHYT_RS10230 0.68 -0.6
2,328,246 + BPHYT_RS10230 0.68 -0.8
2,329,178 - +1.6

Or see this region's nucleotide sequence