Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS09620

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS09615 and BPHYT_RS09620 are separated by 78 nucleotidesBPHYT_RS09620 and BPHYT_RS09625 overlap by 1 nucleotidesBPHYT_RS09625 and BPHYT_RS09630 are separated by 94 nucleotides BPHYT_RS09615: BPHYT_RS09615 - folate-binding protein, at 2,180,802 to 2,181,875 _RS09615 BPHYT_RS09620: BPHYT_RS09620 - aminodeoxychorismate lyase, at 2,181,954 to 2,182,964 _RS09620 BPHYT_RS09625: BPHYT_RS09625 - thymidylate kinase, at 2,182,964 to 2,183,584 _RS09625 BPHYT_RS09630: BPHYT_RS09630 - DNA polymerase III subunit delta', at 2,183,679 to 2,184,713 _RS09630 Position (kb) 2181 2182 2183Strain fitness (log2 ratio) -1 0 1at 2181.926 kb on + strandat 2182.451 kb on + strand, within BPHYT_RS09620at 2182.725 kb on + strand, within BPHYT_RS09620at 2182.725 kb on + strand, within BPHYT_RS09620at 2182.771 kb on - strand, within BPHYT_RS09620at 2182.775 kb on + strand, within BPHYT_RS09620at 2182.779 kb on + strand, within BPHYT_RS09620at 2182.947 kb on + strandat 2183.609 kb on + strandat 2183.609 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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2,181,926 + +0.2
2,182,451 + BPHYT_RS09620 0.49 +0.2
2,182,725 + BPHYT_RS09620 0.76 -1.3
2,182,725 + BPHYT_RS09620 0.76 -0.5
2,182,771 - BPHYT_RS09620 0.81 -0.2
2,182,775 + BPHYT_RS09620 0.81 +0.5
2,182,779 + BPHYT_RS09620 0.82 -0.8
2,182,947 + +0.3
2,183,609 + -1.6
2,183,609 + +0.2

Or see this region's nucleotide sequence