Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02920 and BPHYT_RS02925 overlap by 4 nucleotides BPHYT_RS02925 and BPHYT_RS02930 overlap by 1 nucleotides BPHYT_RS02930 and BPHYT_RS02935 are separated by 161 nucleotides
BPHYT_RS02920: BPHYT_RS02920 - hypothetical protein, at 649,565 to 650,173
_RS02920
BPHYT_RS02925: BPHYT_RS02925 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, at 650,170 to 650,730
_RS02925
BPHYT_RS02930: BPHYT_RS02930 - KpsF/GutQ family protein, at 650,730 to 651,713
_RS02930
BPHYT_RS02935: BPHYT_RS02935 - potassium transporter, at 651,875 to 653,878
_RS02935
Position (kb) 650
651
652 Strain fitness (log2 ratio) -1
0
1 at 651.107 kb on - strand, within BPHYT_RS02930 at 651.107 kb on - strand, within BPHYT_RS02930 at 651.723 kb on - strand at 651.724 kb on + strand at 651.724 kb on + strand at 651.724 kb on + strand at 651.856 kb on + strand at 651.857 kb on - strand at 652.324 kb on + strand, within BPHYT_RS02935 at 652.464 kb on + strand, within BPHYT_RS02935 at 652.465 kb on - strand, within BPHYT_RS02935
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 651,107 - BPHYT_RS02930 0.38 -0.9 651,107 - BPHYT_RS02930 0.38 -0.2 651,723 - +0.0 651,724 + -0.3 651,724 + -0.5 651,724 + +0.1 651,856 + +0.1 651,857 - +0.8 652,324 + BPHYT_RS02935 0.22 +0.6 652,464 + BPHYT_RS02935 0.29 +0.2 652,465 - BPHYT_RS02935 0.29 -0.1
Or see this region's nucleotide sequence