Experiment: LB, 30C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02000 and BPHYT_RS02005 are separated by 373 nucleotides BPHYT_RS02005 and BPHYT_RS02010 are separated by 44 nucleotides BPHYT_RS02010 and BPHYT_RS02015 are separated by 95 nucleotides
BPHYT_RS02000: BPHYT_RS02000 - sodium:proton antiporter, at 452,811 to 454,466
_RS02000
BPHYT_RS02005: BPHYT_RS02005 - diguanylate phosphodiesterase, at 454,840 to 456,108
_RS02005
BPHYT_RS02010: BPHYT_RS02010 - copper homeostasis protein CutC, at 456,153 to 456,848
_RS02010
BPHYT_RS02015: BPHYT_RS02015 - phenylpyruvate ferredoxin oxidoreductase (EC 1.2.7.8) <small>(from data)</small>, at 456,944 to 460,531
_RS02015
Position (kb) 454
455
456
457 Strain fitness (log2 ratio) -1
0
1
2
3 at 454.029 kb on - strand, within BPHYT_RS02000 at 454.446 kb on + strand at 454.447 kb on - strand at 454.451 kb on + strand at 454.484 kb on + strand at 454.484 kb on + strand at 454.485 kb on - strand at 454.486 kb on + strand at 454.486 kb on + strand at 454.486 kb on + strand at 454.487 kb on - strand at 454.603 kb on + strand at 454.704 kb on + strand at 454.748 kb on + strand at 455.138 kb on + strand, within BPHYT_RS02005 at 455.201 kb on - strand, within BPHYT_RS02005 at 455.950 kb on + strand, within BPHYT_RS02005 at 456.153 kb on - strand at 456.355 kb on - strand, within BPHYT_RS02010 at 456.355 kb on - strand, within BPHYT_RS02010 at 456.370 kb on - strand, within BPHYT_RS02010 at 456.854 kb on + strand at 456.859 kb on - strand at 456.859 kb on - strand at 456.859 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, 30C remove 454,029 - BPHYT_RS02000 0.74 +0.3 454,446 + +3.0 454,447 - -0.4 454,451 + +0.5 454,484 + +1.8 454,484 + +0.2 454,485 - +1.2 454,486 + +0.6 454,486 + -0.8 454,486 + -0.1 454,487 - +0.0 454,603 + -0.4 454,704 + +0.2 454,748 + +0.7 455,138 + BPHYT_RS02005 0.23 -1.3 455,201 - BPHYT_RS02005 0.28 -1.2 455,950 + BPHYT_RS02005 0.87 -0.0 456,153 - -0.6 456,355 - BPHYT_RS02010 0.29 -0.7 456,355 - BPHYT_RS02010 0.29 +1.2 456,370 - BPHYT_RS02010 0.31 +0.1 456,854 + -0.9 456,859 - +0.8 456,859 - +0.5 456,859 - -0.5
Or see this region's nucleotide sequence