Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS01625

Experiment: LB, 30C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS01620 and BPHYT_RS01625 overlap by 4 nucleotidesBPHYT_RS01625 and BPHYT_RS01630 are separated by 143 nucleotides BPHYT_RS01620: BPHYT_RS01620 - sensor histidine kinase, at 368,130 to 369,440 _RS01620 BPHYT_RS01625: BPHYT_RS01625 - chemotaxis protein CheY, at 369,437 to 369,979 _RS01625 BPHYT_RS01630: BPHYT_RS01630 - ATP-dependent protease ATPase subunit HslU, at 370,123 to 371,469 _RS01630 Position (kb) 369 370Strain fitness (log2 ratio) -3 -2 -1 0 1at 368.439 kb on + strand, within BPHYT_RS01620at 368.439 kb on + strand, within BPHYT_RS01620at 368.439 kb on + strand, within BPHYT_RS01620at 368.439 kb on + strand, within BPHYT_RS01620at 368.439 kb on + strand, within BPHYT_RS01620at 368.584 kb on - strand, within BPHYT_RS01620at 368.672 kb on - strand, within BPHYT_RS01620at 368.672 kb on - strand, within BPHYT_RS01620at 368.672 kb on - strand, within BPHYT_RS01620at 368.784 kb on - strand, within BPHYT_RS01620at 368.847 kb on + strand, within BPHYT_RS01620at 368.848 kb on - strand, within BPHYT_RS01620at 368.848 kb on - strand, within BPHYT_RS01620at 368.848 kb on - strand, within BPHYT_RS01620at 368.849 kb on + strand, within BPHYT_RS01620at 368.891 kb on + strand, within BPHYT_RS01620at 368.891 kb on + strand, within BPHYT_RS01620at 368.892 kb on - strand, within BPHYT_RS01620at 368.892 kb on - strand, within BPHYT_RS01620at 369.053 kb on + strand, within BPHYT_RS01620at 369.172 kb on + strand, within BPHYT_RS01620at 369.172 kb on + strand, within BPHYT_RS01620at 369.173 kb on - strand, within BPHYT_RS01620at 369.173 kb on - strand, within BPHYT_RS01620at 369.239 kb on + strand, within BPHYT_RS01620at 369.239 kb on + strand, within BPHYT_RS01620at 369.239 kb on + strand, within BPHYT_RS01620at 369.240 kb on - strand, within BPHYT_RS01620at 369.240 kb on - strand, within BPHYT_RS01620at 369.267 kb on + strand, within BPHYT_RS01620at 369.359 kb on + strandat 369.737 kb on + strand, within BPHYT_RS01625at 369.737 kb on + strand, within BPHYT_RS01625at 369.865 kb on + strand, within BPHYT_RS01625at 369.866 kb on - strand, within BPHYT_RS01625at 369.866 kb on - strand, within BPHYT_RS01625at 369.866 kb on - strand, within BPHYT_RS01625at 369.977 kb on + strandat 369.977 kb on + strandat 369.978 kb on - strandat 370.016 kb on - strandat 370.268 kb on + strand, within BPHYT_RS01630at 370.392 kb on - strand, within BPHYT_RS01630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, 30C
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368,439 + BPHYT_RS01620 0.24 -0.7
368,439 + BPHYT_RS01620 0.24 -0.3
368,439 + BPHYT_RS01620 0.24 -1.3
368,439 + BPHYT_RS01620 0.24 -0.6
368,439 + BPHYT_RS01620 0.24 -0.3
368,584 - BPHYT_RS01620 0.35 -3.0
368,672 - BPHYT_RS01620 0.41 +0.2
368,672 - BPHYT_RS01620 0.41 -2.2
368,672 - BPHYT_RS01620 0.41 -0.8
368,784 - BPHYT_RS01620 0.50 -0.3
368,847 + BPHYT_RS01620 0.55 -0.5
368,848 - BPHYT_RS01620 0.55 -1.4
368,848 - BPHYT_RS01620 0.55 -2.7
368,848 - BPHYT_RS01620 0.55 -1.7
368,849 + BPHYT_RS01620 0.55 -0.4
368,891 + BPHYT_RS01620 0.58 -0.6
368,891 + BPHYT_RS01620 0.58 -0.3
368,892 - BPHYT_RS01620 0.58 -1.4
368,892 - BPHYT_RS01620 0.58 -1.6
369,053 + BPHYT_RS01620 0.70 -0.5
369,172 + BPHYT_RS01620 0.79 -1.2
369,172 + BPHYT_RS01620 0.79 +0.0
369,173 - BPHYT_RS01620 0.80 -2.9
369,173 - BPHYT_RS01620 0.80 -1.7
369,239 + BPHYT_RS01620 0.85 +0.5
369,239 + BPHYT_RS01620 0.85 +0.7
369,239 + BPHYT_RS01620 0.85 -0.8
369,240 - BPHYT_RS01620 0.85 -1.8
369,240 - BPHYT_RS01620 0.85 -2.5
369,267 + BPHYT_RS01620 0.87 -0.4
369,359 + -0.6
369,737 + BPHYT_RS01625 0.55 -1.7
369,737 + BPHYT_RS01625 0.55 -2.6
369,865 + BPHYT_RS01625 0.79 -0.6
369,866 - BPHYT_RS01625 0.79 -3.1
369,866 - BPHYT_RS01625 0.79 -2.9
369,866 - BPHYT_RS01625 0.79 -2.7
369,977 + -0.6
369,977 + -0.2
369,978 - -0.1
370,016 - -0.3
370,268 + BPHYT_RS01630 0.11 -0.3
370,392 - BPHYT_RS01630 0.20 -1.4

Or see this region's nucleotide sequence