Experiment: Tween 20 (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22480 and AO356_22485 are separated by 63 nucleotides AO356_22485 and AO356_22490 are separated by 86 nucleotides AO356_22490 and AO356_22495 are separated by 181 nucleotides AO356_22495 and AO356_22500 overlap by 4 nucleotides
AO356_22480: AO356_22480 - oxidoreductase, at 5,023,651 to 5,025,216
_22480
AO356_22485: AO356_22485 - hypothetical protein, at 5,025,280 to 5,026,053
_22485
AO356_22490: AO356_22490 - phosphohydrolase, at 5,026,140 to 5,027,579
_22490
AO356_22495: AO356_22495 - RNA polymerase subunit sigma-24, at 5,027,761 to 5,028,267
_22495
AO356_22500: AO356_22500 - hypothetical protein, at 5,028,264 to 5,029,190
_22500
Position (kb)
5026
5027
5028 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 5025.191 kb on + strand at 5025.192 kb on - strand at 5025.192 kb on - strand at 5025.310 kb on + strand at 5025.311 kb on - strand at 5025.602 kb on + strand, within AO356_22485 at 5025.603 kb on - strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.969 kb on + strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5025.970 kb on - strand, within AO356_22485 at 5026.118 kb on + strand at 5026.146 kb on - strand at 5026.557 kb on + strand, within AO356_22490 at 5026.557 kb on + strand, within AO356_22490 at 5026.558 kb on - strand, within AO356_22490 at 5026.855 kb on + strand, within AO356_22490 at 5026.855 kb on + strand, within AO356_22490 at 5026.856 kb on - strand, within AO356_22490 at 5026.856 kb on - strand, within AO356_22490 at 5026.925 kb on - strand, within AO356_22490 at 5026.969 kb on - strand, within AO356_22490 at 5026.969 kb on - strand, within AO356_22490 at 5027.028 kb on + strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.029 kb on - strand, within AO356_22490 at 5027.030 kb on + strand, within AO356_22490 at 5027.030 kb on + strand, within AO356_22490 at 5027.031 kb on - strand, within AO356_22490 at 5027.031 kb on - strand, within AO356_22490 at 5027.061 kb on + strand, within AO356_22490 at 5027.155 kb on - strand, within AO356_22490 at 5027.389 kb on + strand, within AO356_22490 at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5027.506 kb on + strand at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.017 kb on + strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.018 kb on - strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.214 kb on + strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.215 kb on - strand, within AO356_22495 at 5028.433 kb on + strand, within AO356_22500 at 5028.433 kb on + strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.434 kb on - strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.561 kb on + strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500 at 5028.562 kb on - strand, within AO356_22500
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 (C) remove 5,025,191 + +0.8 5,025,192 - +0.9 5,025,192 - +0.6 5,025,310 + +0.5 5,025,311 - +1.1 5,025,602 + AO356_22485 0.42 +0.7 5,025,603 - AO356_22485 0.42 -0.7 5,025,969 + AO356_22485 0.89 +1.2 5,025,969 + AO356_22485 0.89 -0.5 5,025,969 + AO356_22485 0.89 +0.8 5,025,969 + AO356_22485 0.89 -0.6 5,025,970 - AO356_22485 0.89 +0.9 5,025,970 - AO356_22485 0.89 +1.0 5,025,970 - AO356_22485 0.89 +1.2 5,026,118 + +0.6 5,026,146 - +0.0 5,026,557 + AO356_22490 0.29 +0.6 5,026,557 + AO356_22490 0.29 +0.1 5,026,558 - AO356_22490 0.29 +0.6 5,026,855 + AO356_22490 0.50 +0.2 5,026,855 + AO356_22490 0.50 -0.5 5,026,856 - AO356_22490 0.50 +0.8 5,026,856 - AO356_22490 0.50 +0.7 5,026,925 - AO356_22490 0.55 -0.1 5,026,969 - AO356_22490 0.58 -0.7 5,026,969 - AO356_22490 0.58 -0.5 5,027,028 + AO356_22490 0.62 -0.4 5,027,029 - AO356_22490 0.62 +1.6 5,027,029 - AO356_22490 0.62 +0.1 5,027,029 - AO356_22490 0.62 -0.7 5,027,030 + AO356_22490 0.62 -0.9 5,027,030 + AO356_22490 0.62 +1.0 5,027,031 - AO356_22490 0.62 +0.1 5,027,031 - AO356_22490 0.62 +1.6 5,027,061 + AO356_22490 0.64 +0.5 5,027,155 - AO356_22490 0.70 +0.5 5,027,389 + AO356_22490 0.87 +0.0 5,027,506 + +0.3 5,027,506 + -0.4 5,027,506 + +0.0 5,027,506 + +1.9 5,028,017 + AO356_22495 0.50 -0.6 5,028,017 + AO356_22495 0.50 +0.3 5,028,017 + AO356_22495 0.50 -0.0 5,028,017 + AO356_22495 0.50 -0.1 5,028,017 + AO356_22495 0.50 +0.3 5,028,018 - AO356_22495 0.51 +0.5 5,028,018 - AO356_22495 0.51 -0.0 5,028,214 + AO356_22495 0.89 +0.2 5,028,214 + AO356_22495 0.89 +0.4 5,028,214 + +1.0 5,028,214 + AO356_22495 0.89 -0.5 5,028,214 + AO356_22495 0.89 +0.5 5,028,214 + AO356_22495 0.89 -0.0 5,028,214 + AO356_22495 0.89 +0.6 5,028,214 + AO356_22495 0.89 -1.3 5,028,214 + AO356_22495 0.89 -0.8 5,028,214 + AO356_22495 0.89 +0.2 5,028,215 - AO356_22495 0.90 -0.6 5,028,215 - AO356_22495 0.90 -2.0 5,028,215 - AO356_22495 0.90 -0.3 5,028,215 - AO356_22495 0.90 +0.6 5,028,215 - AO356_22495 0.90 -0.2 5,028,215 - AO356_22495 0.90 -0.4 5,028,215 - AO356_22495 0.90 -0.2 5,028,433 + AO356_22500 0.18 +0.0 5,028,433 + AO356_22500 0.18 +0.0 5,028,434 - AO356_22500 0.18 +0.2 5,028,434 - AO356_22500 0.18 +0.6 5,028,561 + AO356_22500 0.32 +0.5 5,028,561 + AO356_22500 0.32 -0.2 5,028,561 + AO356_22500 0.32 +0.1 5,028,561 + AO356_22500 0.32 -0.5 5,028,561 + AO356_22500 0.32 +0.6 5,028,561 + AO356_22500 0.32 -0.7 5,028,562 - AO356_22500 0.32 +0.1 5,028,562 - AO356_22500 0.32 +1.0
Or see this region's nucleotide sequence