Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_11315

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_11310 and AO356_11315 are separated by 13 nucleotidesAO356_11315 and AO356_11320 are separated by 112 nucleotides AO356_11310: AO356_11310 - coproporphyrinogen III oxidase, at 2,563,719 to 2,564,633 _11310 AO356_11315: AO356_11315 - shikimate dehydrogenase, at 2,564,647 to 2,565,468 _11315 AO356_11320: AO356_11320 - SulP family inorganic anion transporter, at 2,565,581 to 2,567,149 _11320 Position (kb) 2564 2565 2566Strain fitness (log2 ratio) -2 -1 0 1at 2563.650 kb on + strandat 2563.651 kb on - strandat 2563.681 kb on + strandat 2563.683 kb on + strandat 2563.683 kb on + strandat 2563.683 kb on + strandat 2563.683 kb on + strandat 2563.683 kb on + strandat 2563.697 kb on + strandat 2563.697 kb on + strandat 2563.697 kb on + strandat 2564.641 kb on + strandat 2564.656 kb on + strandat 2564.656 kb on + strandat 2564.656 kb on + strandat 2564.656 kb on + strandat 2564.744 kb on - strand, within AO356_11315at 2564.901 kb on + strand, within AO356_11315at 2564.902 kb on - strand, within AO356_11315at 2565.292 kb on + strand, within AO356_11315at 2565.293 kb on - strand, within AO356_11315at 2565.467 kb on - strandat 2565.467 kb on - strandat 2565.467 kb on - strandat 2565.478 kb on - strandat 2565.478 kb on - strandat 2565.478 kb on - strandat 2565.478 kb on - strandat 2565.478 kb on - strandat 2565.478 kb on - strandat 2565.564 kb on + strandat 2565.564 kb on + strandat 2565.564 kb on + strandat 2565.564 kb on + strandat 2565.565 kb on - strandat 2565.565 kb on - strandat 2565.673 kb on + strandat 2565.729 kb on + strandat 2565.729 kb on + strandat 2565.730 kb on - strandat 2565.794 kb on + strand, within AO356_11320at 2565.794 kb on + strand, within AO356_11320at 2565.794 kb on + strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.795 kb on - strand, within AO356_11320at 2565.804 kb on + strand, within AO356_11320at 2565.805 kb on - strand, within AO356_11320at 2565.805 kb on - strand, within AO356_11320at 2565.903 kb on + strand, within AO356_11320at 2565.904 kb on - strand, within AO356_11320at 2565.923 kb on + strand, within AO356_11320at 2565.923 kb on + strand, within AO356_11320at 2565.933 kb on + strand, within AO356_11320at 2565.933 kb on + strand, within AO356_11320at 2565.933 kb on + strand, within AO356_11320at 2565.933 kb on + strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2565.934 kb on - strand, within AO356_11320at 2566.014 kb on + strand, within AO356_11320at 2566.185 kb on + strand, within AO356_11320at 2566.185 kb on + strand, within AO356_11320at 2566.185 kb on + strand, within AO356_11320at 2566.185 kb on + strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.186 kb on - strand, within AO356_11320at 2566.307 kb on + strand, within AO356_11320at 2566.307 kb on + strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320at 2566.308 kb on - strand, within AO356_11320

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,563,650 + -1.0
2,563,651 - +0.0
2,563,681 + +0.3
2,563,683 + +0.1
2,563,683 + +0.1
2,563,683 + +0.3
2,563,683 + +0.7
2,563,683 + -0.4
2,563,697 + -0.2
2,563,697 + +0.5
2,563,697 + +0.2
2,564,641 + -0.8
2,564,656 + -0.5
2,564,656 + -0.3
2,564,656 + +0.3
2,564,656 + -1.0
2,564,744 - AO356_11315 0.12 +0.2
2,564,901 + AO356_11315 0.31 -0.1
2,564,902 - AO356_11315 0.31 -2.1
2,565,292 + AO356_11315 0.78 -0.3
2,565,293 - AO356_11315 0.79 +0.2
2,565,467 - +1.3
2,565,467 - +0.6
2,565,467 - -0.5
2,565,478 - -0.6
2,565,478 - +0.1
2,565,478 - +0.2
2,565,478 - +0.3
2,565,478 - -0.6
2,565,478 - +1.5
2,565,564 + +0.5
2,565,564 + -0.3
2,565,564 + +0.8
2,565,564 + -0.4
2,565,565 - +1.2
2,565,565 - +0.2
2,565,673 + +0.4
2,565,729 + -0.8
2,565,729 + +0.5
2,565,730 - -0.8
2,565,794 + AO356_11320 0.14 -0.3
2,565,794 + AO356_11320 0.14 +0.8
2,565,794 + AO356_11320 0.14 +0.4
2,565,795 - AO356_11320 0.14 -0.6
2,565,795 - AO356_11320 0.14 +0.5
2,565,795 - AO356_11320 0.14 +0.4
2,565,795 - AO356_11320 0.14 +0.7
2,565,795 - AO356_11320 0.14 +0.3
2,565,795 - AO356_11320 0.14 +1.4
2,565,795 - AO356_11320 0.14 +0.0
2,565,795 - AO356_11320 0.14 +0.5
2,565,795 - AO356_11320 0.14 -0.0
2,565,795 - AO356_11320 0.14 +1.1
2,565,804 + AO356_11320 0.14 +0.2
2,565,805 - AO356_11320 0.14 +0.1
2,565,805 - AO356_11320 0.14 +0.5
2,565,903 + AO356_11320 0.21 +0.9
2,565,904 - AO356_11320 0.21 -0.5
2,565,923 + AO356_11320 0.22 +0.8
2,565,923 + AO356_11320 0.22 +0.8
2,565,933 + AO356_11320 0.22 +0.3
2,565,933 + AO356_11320 0.22 -0.1
2,565,933 + AO356_11320 0.22 +0.4
2,565,933 + AO356_11320 0.22 -0.9
2,565,934 - AO356_11320 0.22 -0.8
2,565,934 - AO356_11320 0.22 -0.2
2,565,934 - AO356_11320 0.22 -0.0
2,565,934 - AO356_11320 0.22 -0.6
2,565,934 - AO356_11320 0.22 -0.9
2,565,934 - AO356_11320 0.22 -2.2
2,566,014 + AO356_11320 0.28 +1.2
2,566,185 + AO356_11320 0.38 +0.8
2,566,185 + AO356_11320 0.38 +0.1
2,566,185 + AO356_11320 0.38 +0.2
2,566,185 + AO356_11320 0.38 -0.8
2,566,186 - AO356_11320 0.39 +0.6
2,566,186 - AO356_11320 0.39 +1.4
2,566,186 - AO356_11320 0.39 +0.1
2,566,186 - AO356_11320 0.39 -1.1
2,566,186 - AO356_11320 0.39 -0.3
2,566,186 - AO356_11320 0.39 -1.5
2,566,186 - AO356_11320 0.39 +0.3
2,566,307 + AO356_11320 0.46 +0.1
2,566,307 + AO356_11320 0.46 -0.2
2,566,308 - AO356_11320 0.46 -0.4
2,566,308 - AO356_11320 0.46 -0.7
2,566,308 - AO356_11320 0.46 -0.5
2,566,308 - AO356_11320 0.46 -0.4
2,566,308 - AO356_11320 0.46 +0.2
2,566,308 - AO356_11320 0.46 +0.3

Or see this region's nucleotide sequence