Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_09710

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_09705 and AO356_09710 are separated by 120 nucleotidesAO356_09710 and AO356_09715 are separated by 190 nucleotidesAO356_09715 and AO356_09720 overlap by 4 nucleotides AO356_09705: AO356_09705 - glutamine synthetase, at 2,203,667 to 2,205,073 _09705 AO356_09710: AO356_09710 - chorismate mutase, at 2,205,194 to 2,205,757 _09710 AO356_09715: AO356_09715 - hypothetical protein, at 2,205,948 to 2,206,466 _09715 AO356_09720: AO356_09720 - penicillin-binding protein, at 2,206,463 to 2,207,086 _09720 Position (kb) 2205 2206Strain fitness (log2 ratio) -1 0 1 2 3at 2205.104 kb on + strandat 2205.104 kb on + strandat 2205.148 kb on + strandat 2205.148 kb on + strandat 2205.176 kb on + strandat 2205.176 kb on + strandat 2205.176 kb on + strandat 2205.177 kb on - strandat 2205.177 kb on - strandat 2205.346 kb on + strand, within AO356_09710at 2205.346 kb on + strand, within AO356_09710at 2205.346 kb on + strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.347 kb on - strand, within AO356_09710at 2205.428 kb on + strand, within AO356_09710at 2205.428 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.474 kb on + strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.475 kb on - strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.497 kb on + strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.498 kb on - strand, within AO356_09710at 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.739 kb on + strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.740 kb on - strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.909 kb on + strandat 2205.910 kb on - strandat 2205.910 kb on - strandat 2205.910 kb on - strandat 2205.947 kb on + strandat 2205.948 kb on - strandat 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.011 kb on + strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.012 kb on - strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.017 kb on + strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.018 kb on - strand, within AO356_09715at 2206.045 kb on - strand, within AO356_09715at 2206.179 kb on + strand, within AO356_09715at 2206.180 kb on - strand, within AO356_09715at 2206.255 kb on + strand, within AO356_09715at 2206.256 kb on - strand, within AO356_09715at 2206.256 kb on - strand, within AO356_09715at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.526 kb on + strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.527 kb on - strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.528 kb on + strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.529 kb on - strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.532 kb on + strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.533 kb on - strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.557 kb on + strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.558 kb on - strand, within AO356_09720at 2206.688 kb on + strand, within AO356_09720at 2206.732 kb on - strand, within AO356_09720

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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2,205,104 + +0.7
2,205,104 + -0.0
2,205,148 + +0.6
2,205,148 + +0.5
2,205,176 + -0.2
2,205,176 + +1.4
2,205,176 + -0.7
2,205,177 - +0.3
2,205,177 - +0.4
2,205,346 + AO356_09710 0.27 -0.1
2,205,346 + AO356_09710 0.27 +1.2
2,205,346 + AO356_09710 0.27 -0.4
2,205,347 - AO356_09710 0.27 -0.1
2,205,347 - AO356_09710 0.27 +0.4
2,205,347 - AO356_09710 0.27 +1.1
2,205,347 - AO356_09710 0.27 -0.5
2,205,347 - AO356_09710 0.27 -1.1
2,205,428 + AO356_09710 0.41 -0.5
2,205,428 + AO356_09710 0.41 -1.4
2,205,474 + AO356_09710 0.50 -0.3
2,205,474 + AO356_09710 0.50 -0.1
2,205,474 + AO356_09710 0.50 +0.0
2,205,474 + AO356_09710 0.50 +0.5
2,205,474 + AO356_09710 0.50 -0.1
2,205,474 + AO356_09710 0.50 -0.8
2,205,474 + AO356_09710 0.50 -0.3
2,205,475 - AO356_09710 0.50 -0.2
2,205,475 - AO356_09710 0.50 +0.9
2,205,475 - AO356_09710 0.50 +0.8
2,205,475 - AO356_09710 0.50 -0.1
2,205,475 - AO356_09710 0.50 +0.4
2,205,497 + AO356_09710 0.54 +0.9
2,205,497 + AO356_09710 0.54 -0.4
2,205,497 + AO356_09710 0.54 +0.3
2,205,497 + AO356_09710 0.54 +0.6
2,205,497 + AO356_09710 0.54 -0.0
2,205,497 + AO356_09710 0.54 +0.5
2,205,497 + AO356_09710 0.54 -0.2
2,205,497 + AO356_09710 0.54 +0.2
2,205,498 - AO356_09710 0.54 -0.7
2,205,498 - AO356_09710 0.54 -0.7
2,205,498 - AO356_09710 0.54 +1.7
2,205,498 - AO356_09710 0.54 +0.6
2,205,498 - AO356_09710 0.54 -0.3
2,205,498 - AO356_09710 0.54 -0.5
2,205,498 - AO356_09710 0.54 +0.4
2,205,739 + -1.2
2,205,739 + -0.0
2,205,739 + -0.8
2,205,739 + +0.0
2,205,739 + +2.7
2,205,740 - -0.6
2,205,740 - +1.9
2,205,740 - +0.6
2,205,740 - -0.6
2,205,740 - -0.2
2,205,740 - +0.8
2,205,909 + -0.0
2,205,909 + -0.7
2,205,909 + -0.7
2,205,909 + +1.4
2,205,909 + -0.4
2,205,909 + +0.1
2,205,909 + +0.1
2,205,909 + +1.0
2,205,909 + +0.3
2,205,909 + +0.6
2,205,909 + -0.3
2,205,910 - -1.1
2,205,910 - +0.1
2,205,910 - +0.8
2,205,947 + -0.5
2,205,948 - -0.1
2,206,011 + AO356_09715 0.12 +0.1
2,206,011 + AO356_09715 0.12 +0.7
2,206,011 + AO356_09715 0.12 +0.1
2,206,011 + AO356_09715 0.12 -0.5
2,206,011 + AO356_09715 0.12 +1.6
2,206,012 - AO356_09715 0.12 +0.4
2,206,012 - AO356_09715 0.12 +0.8
2,206,012 - AO356_09715 0.12 -0.3
2,206,012 - AO356_09715 0.12 -0.2
2,206,012 - AO356_09715 0.12 -0.5
2,206,012 - AO356_09715 0.12 +0.0
2,206,012 - AO356_09715 0.12 +2.0
2,206,017 + AO356_09715 0.13 +0.1
2,206,017 + AO356_09715 0.13 +0.4
2,206,017 + AO356_09715 0.13 +1.1
2,206,017 + AO356_09715 0.13 +1.1
2,206,017 + AO356_09715 0.13 -0.4
2,206,017 + AO356_09715 0.13 +0.6
2,206,017 + AO356_09715 0.13 +0.6
2,206,017 + AO356_09715 0.13 +0.7
2,206,017 + AO356_09715 0.13 +0.2
2,206,017 + AO356_09715 0.13 +0.5
2,206,018 - AO356_09715 0.13 +0.4
2,206,018 - AO356_09715 0.13 -0.8
2,206,018 - AO356_09715 0.13 +0.2
2,206,018 - AO356_09715 0.13 +2.0
2,206,018 - AO356_09715 0.13 +0.1
2,206,018 - AO356_09715 0.13 +0.2
2,206,018 - AO356_09715 0.13 +0.2
2,206,018 - AO356_09715 0.13 -0.2
2,206,045 - AO356_09715 0.19 +0.6
2,206,179 + AO356_09715 0.45 +0.7
2,206,180 - AO356_09715 0.45 +0.9
2,206,255 + AO356_09715 0.59 +0.6
2,206,256 - AO356_09715 0.59 +0.1
2,206,256 - AO356_09715 0.59 +0.0
2,206,526 + AO356_09720 0.10 +0.3
2,206,526 + AO356_09720 0.10 -0.9
2,206,526 + AO356_09720 0.10 -0.2
2,206,526 + AO356_09720 0.10 -1.1
2,206,527 - AO356_09720 0.10 +1.0
2,206,527 - AO356_09720 0.10 +0.6
2,206,527 - AO356_09720 0.10 -0.1
2,206,527 - AO356_09720 0.10 +0.3
2,206,527 - AO356_09720 0.10 -0.2
2,206,527 - AO356_09720 0.10 +0.1
2,206,527 - AO356_09720 0.10 +0.3
2,206,528 + AO356_09720 0.10 +0.7
2,206,528 + AO356_09720 0.10 +0.8
2,206,528 + AO356_09720 0.10 -0.2
2,206,528 + AO356_09720 0.10 -0.0
2,206,528 + AO356_09720 0.10 -0.3
2,206,528 + AO356_09720 0.10 -0.2
2,206,528 + AO356_09720 0.10 +0.3
2,206,528 + AO356_09720 0.10 -0.1
2,206,528 + AO356_09720 0.10 +0.8
2,206,529 - AO356_09720 0.11 -0.0
2,206,529 - AO356_09720 0.11 +3.0
2,206,529 - AO356_09720 0.11 -0.0
2,206,529 - AO356_09720 0.11 +1.3
2,206,529 - AO356_09720 0.11 +1.1
2,206,529 - AO356_09720 0.11 +0.1
2,206,529 - AO356_09720 0.11 +0.1
2,206,529 - AO356_09720 0.11 +1.1
2,206,529 - AO356_09720 0.11 -0.9
2,206,529 - AO356_09720 0.11 -1.2
2,206,532 + AO356_09720 0.11 +0.0
2,206,532 + AO356_09720 0.11 +0.9
2,206,532 + AO356_09720 0.11 +0.3
2,206,532 + AO356_09720 0.11 +0.6
2,206,532 + AO356_09720 0.11 +0.2
2,206,532 + AO356_09720 0.11 +0.3
2,206,533 - AO356_09720 0.11 +0.6
2,206,533 - AO356_09720 0.11 -0.1
2,206,533 - AO356_09720 0.11 +0.4
2,206,533 - AO356_09720 0.11 +1.2
2,206,533 - AO356_09720 0.11 +0.8
2,206,533 - AO356_09720 0.11 +0.3
2,206,533 - AO356_09720 0.11 +0.1
2,206,533 - AO356_09720 0.11 +0.7
2,206,533 - AO356_09720 0.11 -0.2
2,206,557 + AO356_09720 0.15 +0.6
2,206,557 + AO356_09720 0.15 -0.4
2,206,557 + AO356_09720 0.15 -0.0
2,206,558 - AO356_09720 0.15 -0.0
2,206,558 - AO356_09720 0.15 +1.4
2,206,558 - AO356_09720 0.15 +0.0
2,206,688 + AO356_09720 0.36 +0.2
2,206,732 - AO356_09720 0.43 +0.0

Or see this region's nucleotide sequence