Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_02825

Experiment: Tween 20 (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_02820 and AO356_02825 are separated by 157 nucleotidesAO356_02825 and AO356_02830 are separated by 184 nucleotides AO356_02820: AO356_02820 - EstX protein, at 619,947 to 620,936 _02820 AO356_02825: AO356_02825 - phosphoenolpyruvate synthase, at 621,094 to 623,469 _02825 AO356_02830: AO356_02830 - transcriptional regulator, at 623,654 to 624,472 _02830 Position (kb) 621 622 623 624Strain fitness (log2 ratio) -2 -1 0 1at 620.285 kb on + strand, within AO356_02820at 620.285 kb on + strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.286 kb on - strand, within AO356_02820at 620.413 kb on + strand, within AO356_02820at 620.413 kb on + strand, within AO356_02820at 620.414 kb on - strand, within AO356_02820at 620.414 kb on - strand, within AO356_02820at 620.474 kb on - strand, within AO356_02820at 620.474 kb on - strand, within AO356_02820at 620.474 kb on - strand, within AO356_02820at 620.594 kb on - strand, within AO356_02820at 620.594 kb on - strand, within AO356_02820at 620.693 kb on - strand, within AO356_02820at 620.722 kb on + strand, within AO356_02820at 620.723 kb on - strand, within AO356_02820at 620.723 kb on - strand, within AO356_02820at 620.830 kb on + strand, within AO356_02820at 620.860 kb on + strandat 620.861 kb on - strandat 620.937 kb on - strandat 620.937 kb on - strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.051 kb on + strandat 621.065 kb on + strandat 621.065 kb on + strandat 621.066 kb on - strandat 621.066 kb on - strandat 621.066 kb on - strandat 621.239 kb on + strandat 621.639 kb on + strand, within AO356_02825at 621.639 kb on + strand, within AO356_02825at 621.639 kb on + strand, within AO356_02825at 621.639 kb on + strand, within AO356_02825at 621.641 kb on + strand, within AO356_02825at 621.642 kb on - strand, within AO356_02825at 621.692 kb on + strand, within AO356_02825at 621.693 kb on - strand, within AO356_02825at 621.719 kb on + strand, within AO356_02825at 621.815 kb on + strand, within AO356_02825at 621.836 kb on + strand, within AO356_02825at 621.890 kb on + strand, within AO356_02825at 621.890 kb on + strand, within AO356_02825at 621.891 kb on - strand, within AO356_02825at 621.891 kb on - strand, within AO356_02825at 622.097 kb on + strand, within AO356_02825at 622.098 kb on - strand, within AO356_02825at 622.306 kb on + strand, within AO356_02825at 622.306 kb on + strand, within AO356_02825at 622.306 kb on + strand, within AO356_02825at 622.307 kb on - strand, within AO356_02825at 622.357 kb on + strand, within AO356_02825at 622.357 kb on + strand, within AO356_02825at 622.431 kb on - strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.493 kb on + strand, within AO356_02825at 622.494 kb on - strand, within AO356_02825at 622.494 kb on - strand, within AO356_02825at 622.494 kb on - strand, within AO356_02825at 622.494 kb on - strand, within AO356_02825at 622.494 kb on - strand, within AO356_02825at 622.547 kb on + strand, within AO356_02825at 622.547 kb on + strand, within AO356_02825at 622.547 kb on + strand, within AO356_02825at 622.548 kb on - strand, within AO356_02825at 622.548 kb on - strand, within AO356_02825at 622.548 kb on - strand, within AO356_02825at 622.548 kb on - strand, within AO356_02825at 622.548 kb on - strand, within AO356_02825at 622.680 kb on - strand, within AO356_02825at 622.680 kb on - strand, within AO356_02825at 622.680 kb on - strand, within AO356_02825at 622.760 kb on + strand, within AO356_02825at 622.760 kb on + strand, within AO356_02825at 622.760 kb on + strand, within AO356_02825at 622.760 kb on + strand, within AO356_02825at 622.761 kb on - strand, within AO356_02825at 622.761 kb on - strand, within AO356_02825at 622.761 kb on - strand, within AO356_02825at 622.761 kb on - strand, within AO356_02825at 623.455 kb on + strandat 623.455 kb on + strandat 623.455 kb on + strandat 623.455 kb on + strandat 623.455 kb on + strandat 623.455 kb on + strandat 623.456 kb on - strandat 623.456 kb on - strandat 623.456 kb on - strandat 623.456 kb on - strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.459 kb on + strandat 623.460 kb on - strandat 623.460 kb on - strandat 623.460 kb on - strandat 623.460 kb on - strandat 623.460 kb on - strandat 623.464 kb on + strandat 623.464 kb on + strandat 623.464 kb on + strandat 623.464 kb on + strandat 623.465 kb on - strandat 623.465 kb on - strandat 623.484 kb on + strandat 623.485 kb on - strandat 623.542 kb on - strandat 623.561 kb on + strandat 623.561 kb on + strandat 623.602 kb on + strandat 623.603 kb on - strandat 623.603 kb on - strandat 623.603 kb on - strandat 623.603 kb on - strandat 623.624 kb on + strandat 623.625 kb on - strandat 623.625 kb on - strandat 623.625 kb on - strandat 623.633 kb on - strandat 623.633 kb on - strandat 623.637 kb on + strandat 623.637 kb on + strandat 623.637 kb on + strandat 623.743 kb on + strand, within AO356_02830at 623.743 kb on + strand, within AO356_02830at 623.744 kb on - strand, within AO356_02830at 623.760 kb on + strand, within AO356_02830at 623.760 kb on + strand, within AO356_02830at 623.761 kb on - strand, within AO356_02830at 623.761 kb on - strand, within AO356_02830at 623.768 kb on + strand, within AO356_02830at 623.802 kb on + strand, within AO356_02830at 623.803 kb on - strand, within AO356_02830at 623.815 kb on + strand, within AO356_02830at 624.014 kb on + strand, within AO356_02830at 624.014 kb on + strand, within AO356_02830at 624.014 kb on + strand, within AO356_02830at 624.015 kb on - strand, within AO356_02830at 624.077 kb on + strand, within AO356_02830at 624.078 kb on - strand, within AO356_02830at 624.078 kb on - strand, within AO356_02830at 624.078 kb on - strand, within AO356_02830at 624.080 kb on + strand, within AO356_02830at 624.081 kb on - strand, within AO356_02830at 624.102 kb on + strand, within AO356_02830at 624.103 kb on - strand, within AO356_02830at 624.103 kb on - strand, within AO356_02830at 624.103 kb on - strand, within AO356_02830at 624.124 kb on + strand, within AO356_02830at 624.125 kb on - strand, within AO356_02830at 624.143 kb on + strand, within AO356_02830at 624.143 kb on + strand, within AO356_02830at 624.143 kb on + strand, within AO356_02830at 624.143 kb on + strand, within AO356_02830at 624.144 kb on - strand, within AO356_02830at 624.144 kb on - strand, within AO356_02830at 624.318 kb on - strand, within AO356_02830at 624.326 kb on + strand, within AO356_02830at 624.326 kb on + strand, within AO356_02830at 624.326 kb on + strand, within AO356_02830at 624.326 kb on + strand, within AO356_02830at 624.327 kb on - strand, within AO356_02830at 624.327 kb on - strand, within AO356_02830at 624.327 kb on - strand, within AO356_02830

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20 (C)
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620,285 + AO356_02820 0.34 +0.8
620,285 + AO356_02820 0.34 -0.8
620,286 - AO356_02820 0.34 +0.5
620,286 - AO356_02820 0.34 -1.5
620,286 - AO356_02820 0.34 -0.7
620,413 + AO356_02820 0.47 +0.4
620,413 + AO356_02820 0.47 -0.5
620,414 - AO356_02820 0.47 +1.1
620,414 - AO356_02820 0.47 +0.5
620,474 - AO356_02820 0.53 +0.5
620,474 - AO356_02820 0.53 +0.7
620,474 - AO356_02820 0.53 +0.7
620,594 - AO356_02820 0.65 +0.0
620,594 - AO356_02820 0.65 +0.1
620,693 - AO356_02820 0.75 +0.4
620,722 + AO356_02820 0.78 +0.8
620,723 - AO356_02820 0.78 -1.0
620,723 - AO356_02820 0.78 +0.7
620,830 + AO356_02820 0.89 +0.5
620,860 + +0.3
620,861 - +0.5
620,937 - +0.3
620,937 - -0.5
621,051 + -0.7
621,051 + +0.4
621,051 + +0.1
621,051 + +0.8
621,051 + -0.1
621,051 + -1.4
621,051 + -1.6
621,051 + +0.5
621,051 + -0.2
621,065 + +0.5
621,065 + -0.8
621,066 - +0.2
621,066 - +0.1
621,066 - -0.7
621,239 + -0.9
621,639 + AO356_02825 0.23 -0.0
621,639 + AO356_02825 0.23 +1.0
621,639 + AO356_02825 0.23 +0.3
621,639 + AO356_02825 0.23 -0.3
621,641 + AO356_02825 0.23 -0.5
621,642 - AO356_02825 0.23 +0.4
621,692 + AO356_02825 0.25 +1.0
621,693 - AO356_02825 0.25 -0.9
621,719 + AO356_02825 0.26 -0.3
621,815 + AO356_02825 0.30 -0.3
621,836 + AO356_02825 0.31 -0.8
621,890 + AO356_02825 0.34 -0.7
621,890 + AO356_02825 0.34 -0.6
621,891 - AO356_02825 0.34 +0.2
621,891 - AO356_02825 0.34 +0.1
622,097 + AO356_02825 0.42 -0.9
622,098 - AO356_02825 0.42 -2.2
622,306 + AO356_02825 0.51 +0.6
622,306 + AO356_02825 0.51 -0.8
622,306 + AO356_02825 0.51 -0.5
622,307 - AO356_02825 0.51 -0.3
622,357 + AO356_02825 0.53 -0.2
622,357 + AO356_02825 0.53 +0.0
622,431 - AO356_02825 0.56 -1.0
622,493 + AO356_02825 0.59 -1.6
622,493 + AO356_02825 0.59 -0.4
622,493 + AO356_02825 0.59 -0.3
622,493 + AO356_02825 0.59 +0.1
622,493 + AO356_02825 0.59 -0.5
622,493 + AO356_02825 0.59 -0.3
622,493 + AO356_02825 0.59 -0.9
622,493 + AO356_02825 0.59 +0.0
622,493 + AO356_02825 0.59 -0.4
622,493 + AO356_02825 0.59 -0.3
622,493 + AO356_02825 0.59 +0.2
622,494 - AO356_02825 0.59 -0.7
622,494 - AO356_02825 0.59 -0.5
622,494 - AO356_02825 0.59 -0.9
622,494 - AO356_02825 0.59 +0.2
622,494 - AO356_02825 0.59 -0.3
622,547 + AO356_02825 0.61 -0.7
622,547 + AO356_02825 0.61 +0.4
622,547 + AO356_02825 0.61 -0.3
622,548 - AO356_02825 0.61 -2.2
622,548 - AO356_02825 0.61 -1.0
622,548 - AO356_02825 0.61 -1.0
622,548 - AO356_02825 0.61 -0.5
622,548 - AO356_02825 0.61 +0.3
622,680 - AO356_02825 0.67 -0.5
622,680 - AO356_02825 0.67 -0.4
622,680 - AO356_02825 0.67 +0.0
622,760 + AO356_02825 0.70 -0.3
622,760 + AO356_02825 0.70 +0.2
622,760 + AO356_02825 0.70 -0.3
622,760 + AO356_02825 0.70 -0.7
622,761 - AO356_02825 0.70 -0.7
622,761 - AO356_02825 0.70 -0.2
622,761 - AO356_02825 0.70 +0.2
622,761 - AO356_02825 0.70 -0.6
623,455 + -0.9
623,455 + -1.0
623,455 + -0.2
623,455 + -1.0
623,455 + -0.5
623,455 + -1.0
623,456 - +0.6
623,456 - -1.4
623,456 - -0.9
623,456 - -1.8
623,459 + +0.3
623,459 + +0.3
623,459 + +0.2
623,459 + -0.4
623,459 + -0.4
623,459 + -0.6
623,459 + -0.5
623,460 - -1.7
623,460 - +0.3
623,460 - -1.0
623,460 - +0.6
623,460 - -1.2
623,464 + -0.7
623,464 + -0.9
623,464 + +0.8
623,464 + +0.4
623,465 - -0.5
623,465 - +0.2
623,484 + -0.4
623,485 - -0.5
623,542 - +0.8
623,561 + +0.7
623,561 + -0.7
623,602 + +0.1
623,603 - -2.1
623,603 - -0.1
623,603 - -0.1
623,603 - -1.6
623,624 + -0.3
623,625 - +0.1
623,625 - +0.5
623,625 - +0.7
623,633 - -0.4
623,633 - -0.9
623,637 + -0.7
623,637 + +0.1
623,637 + +0.7
623,743 + AO356_02830 0.11 +0.4
623,743 + AO356_02830 0.11 +0.4
623,744 - AO356_02830 0.11 -0.4
623,760 + AO356_02830 0.13 -0.8
623,760 + AO356_02830 0.13 +0.2
623,761 - AO356_02830 0.13 -0.6
623,761 - AO356_02830 0.13 -1.4
623,768 + AO356_02830 0.14 +0.4
623,802 + AO356_02830 0.18 +0.4
623,803 - AO356_02830 0.18 -0.5
623,815 + AO356_02830 0.20 -1.1
624,014 + AO356_02830 0.44 -0.8
624,014 + AO356_02830 0.44 -1.9
624,014 + AO356_02830 0.44 +0.4
624,015 - AO356_02830 0.44 +0.2
624,077 + AO356_02830 0.52 -0.3
624,078 - AO356_02830 0.52 -0.6
624,078 - AO356_02830 0.52 -0.4
624,078 - AO356_02830 0.52 +0.2
624,080 + AO356_02830 0.52 -0.0
624,081 - AO356_02830 0.52 -1.4
624,102 + AO356_02830 0.55 +0.5
624,103 - AO356_02830 0.55 -1.5
624,103 - AO356_02830 0.55 -0.2
624,103 - AO356_02830 0.55 -0.3
624,124 + AO356_02830 0.57 -0.3
624,125 - AO356_02830 0.58 -1.0
624,143 + AO356_02830 0.60 +0.2
624,143 + AO356_02830 0.60 +0.0
624,143 + AO356_02830 0.60 +0.5
624,143 + AO356_02830 0.60 -2.4
624,144 - AO356_02830 0.60 -1.3
624,144 - AO356_02830 0.60 -0.5
624,318 - AO356_02830 0.81 +0.3
624,326 + AO356_02830 0.82 -0.1
624,326 + AO356_02830 0.82 +0.3
624,326 + AO356_02830 0.82 -1.0
624,326 + AO356_02830 0.82 -0.4
624,327 - AO356_02830 0.82 -0.2
624,327 - AO356_02830 0.82 -0.5
624,327 - AO356_02830 0.82 +0.2

Or see this region's nucleotide sequence