Strain Fitness in Sinorhizobium meliloti 1021 around SMc03863

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03862 and SMc03863 are separated by 332 nucleotidesSMc03863 and SMc03864 are separated by 126 nucleotides SMc03862: SMc03862 - hypothetical protein, at 3,526,182 to 3,526,928 SMc03862 SMc03863: SMc03863 - 50S ribosomal protein L19, at 3,527,261 to 3,527,794 SMc03863 SMc03864: SMc03864 - amino acid-binding periplasmic (signal peptide) ABC transporter protein, at 3,527,921 to 3,528,730 SMc03864 Position (kb) 3527 3528Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3526.283 kb on + strand, within SMc03862at 3526.283 kb on + strand, within SMc03862at 3526.284 kb on - strand, within SMc03862at 3526.284 kb on - strand, within SMc03862at 3526.285 kb on + strandat 3526.285 kb on + strand, within SMc03862at 3526.493 kb on - strand, within SMc03862at 3526.760 kb on + strand, within SMc03862at 3526.761 kb on - strand, within SMc03862at 3526.763 kb on - strandat 3526.763 kb on - strand, within SMc03862at 3526.992 kb on - strandat 3526.992 kb on - strandat 3527.568 kb on - strand, within SMc03863at 3527.605 kb on - strand, within SMc03863at 3527.875 kb on + strandat 3528.278 kb on + strand, within SMc03864at 3528.278 kb on + strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.279 kb on - strand, within SMc03864at 3528.280 kb on + strand, within SMc03864at 3528.281 kb on - strand, within SMc03864at 3528.398 kb on + strand, within SMc03864at 3528.399 kb on - strand, within SMc03864at 3528.410 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.539 kb on + strand, within SMc03864at 3528.540 kb on - strand, within SMc03864at 3528.745 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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3,526,283 + SMc03862 0.14 +0.0
3,526,283 + SMc03862 0.14 +1.0
3,526,284 - SMc03862 0.14 +0.9
3,526,284 - SMc03862 0.14 +0.2
3,526,285 + +2.0
3,526,285 + SMc03862 0.14 +1.9
3,526,493 - SMc03862 0.42 -1.5
3,526,760 + SMc03862 0.77 +0.2
3,526,761 - SMc03862 0.78 -0.2
3,526,763 - +2.0
3,526,763 - SMc03862 0.78 -2.2
3,526,992 - +0.0
3,526,992 - -0.0
3,527,568 - SMc03863 0.57 +3.0
3,527,605 - SMc03863 0.64 +2.1
3,527,875 + +0.5
3,528,278 + SMc03864 0.44 -0.5
3,528,278 + SMc03864 0.44 -0.6
3,528,279 - SMc03864 0.44 -0.1
3,528,279 - SMc03864 0.44 +0.5
3,528,280 + SMc03864 0.44 -0.1
3,528,281 - SMc03864 0.44 -0.0
3,528,398 + SMc03864 0.59 +0.2
3,528,399 - SMc03864 0.59 -1.0
3,528,410 + SMc03864 0.60 -0.9
3,528,539 + SMc03864 0.76 +0.3
3,528,539 + SMc03864 0.76 -0.1
3,528,540 - SMc03864 0.76 -0.0
3,528,745 + +0.0

Or see this region's nucleotide sequence