Strain Fitness in Sinorhizobium meliloti 1021 around SMc03773

Experiment: LB, pH8

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSMc03770 and SMc03772 are separated by 33 nucleotidesSMc03772 and SMc03773 are separated by 130 nucleotidesSMc03773 and SMc03774 overlap by 4 nucleotidesSMc03774 and SMc03775 are separated by 57 nucleotides SMc03770: SMc03770 - 50S ribosomal protein L21, at 3,438,988 to 3,439,359 SMc03770 SMc03772: SMc03772 - 50S ribosomal protein L27, at 3,439,393 to 3,439,662 SMc03772 SMc03773: SMc03773 - hypothetical protein, at 3,439,793 to 3,440,425 SMc03773 SMc03774: SMc03774 - hypothetical protein, at 3,440,422 to 3,441,009 SMc03774 SMc03775: SMc03775 - GTPase ObgE, at 3,441,067 to 3,442,197 SMc03775 Position (kb) 3439 3440 3441Strain fitness (log2 ratio) -2 -1 0 1at 3439.996 kb on + strand, within SMc03773at 3439.996 kb on + strand, within SMc03773at 3439.996 kb on + strand, within SMc03773at 3439.997 kb on - strand, within SMc03773at 3439.997 kb on - strand, within SMc03773at 3440.061 kb on - strand, within SMc03773at 3440.148 kb on - strand, within SMc03773at 3440.181 kb on - strand, within SMc03773at 3440.369 kb on + strandat 3440.400 kb on + strandat 3440.649 kb on + strand, within SMc03774at 3440.767 kb on + strand, within SMc03774at 3440.768 kb on - strand, within SMc03774at 3440.933 kb on - strand, within SMc03774at 3441.016 kb on - strandat 3441.090 kb on + strandat 3441.171 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
remove
3,439,996 + SMc03773 0.32 +0.6
3,439,996 + SMc03773 0.32 -0.8
3,439,996 + SMc03773 0.32 -1.0
3,439,997 - SMc03773 0.32 -1.8
3,439,997 - SMc03773 0.32 -1.9
3,440,061 - SMc03773 0.42 -2.1
3,440,148 - SMc03773 0.56 -2.1
3,440,181 - SMc03773 0.61 -1.8
3,440,369 + -1.0
3,440,400 + -1.4
3,440,649 + SMc03774 0.39 -0.1
3,440,767 + SMc03774 0.59 -1.0
3,440,768 - SMc03774 0.59 -1.1
3,440,933 - SMc03774 0.87 -2.0
3,441,016 - -0.2
3,441,090 + -0.9
3,441,171 + -0.4

Or see this region's nucleotide sequence