Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03770 and SMc03772 are separated by 33 nucleotides SMc03772 and SMc03773 are separated by 130 nucleotides SMc03773 and SMc03774 overlap by 4 nucleotides SMc03774 and SMc03775 are separated by 57 nucleotides
SMc03770: SMc03770 - 50S ribosomal protein L21, at 3,438,988 to 3,439,359
SMc03770
SMc03772: SMc03772 - 50S ribosomal protein L27, at 3,439,393 to 3,439,662
SMc03772
SMc03773: SMc03773 - hypothetical protein, at 3,439,793 to 3,440,425
SMc03773
SMc03774: SMc03774 - hypothetical protein, at 3,440,422 to 3,441,009
SMc03774
SMc03775: SMc03775 - GTPase ObgE, at 3,441,067 to 3,442,197
SMc03775
Position (kb)
3439
3440
3441 Strain fitness (log2 ratio)
-2
-1
0
1 at 3439.996 kb on + strand, within SMc03773 at 3439.996 kb on + strand, within SMc03773 at 3439.996 kb on + strand, within SMc03773 at 3439.997 kb on - strand, within SMc03773 at 3439.997 kb on - strand, within SMc03773 at 3440.061 kb on - strand, within SMc03773 at 3440.148 kb on - strand, within SMc03773 at 3440.181 kb on - strand, within SMc03773 at 3440.369 kb on + strand at 3440.400 kb on + strand at 3440.649 kb on + strand, within SMc03774 at 3440.767 kb on + strand, within SMc03774 at 3440.768 kb on - strand, within SMc03774 at 3440.933 kb on - strand, within SMc03774 at 3441.016 kb on - strand at 3441.090 kb on + strand at 3441.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 3,439,996 + SMc03773 0.32 +0.6 3,439,996 + SMc03773 0.32 -0.8 3,439,996 + SMc03773 0.32 -1.0 3,439,997 - SMc03773 0.32 -1.8 3,439,997 - SMc03773 0.32 -1.9 3,440,061 - SMc03773 0.42 -2.1 3,440,148 - SMc03773 0.56 -2.1 3,440,181 - SMc03773 0.61 -1.8 3,440,369 + -1.0 3,440,400 + -1.4 3,440,649 + SMc03774 0.39 -0.1 3,440,767 + SMc03774 0.59 -1.0 3,440,768 - SMc03774 0.59 -1.1 3,440,933 - SMc03774 0.87 -2.0 3,441,016 - -0.2 3,441,090 + -0.9 3,441,171 + -0.4
Or see this region's nucleotide sequence