Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02907 and SMc02908 are separated by 50 nucleotides SMc02908 and SMc02909 are separated by 37 nucleotides SMc02909 and SMc02910 are separated by 207 nucleotides
SMc02907: SMc02907 - amino acid efflux transmembrane protein, at 262,512 to 263,123
SMc02907
SMc02908: SMc02908 - recombination protein RecR, at 263,174 to 263,779
SMc02908
SMc02909: SMc02909 - transglycosylase transmembrane protein, at 263,817 to 265,055
SMc02909
SMc02910: SMc02910 - transport transmembrane protein, at 265,263 to 266,918
SMc02910
Position (kb) 263
264
265
266 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 262.865 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.896 kb on + strand, within SMc02907 at 262.897 kb on - strand, within SMc02907 at 263.129 kb on - strand at 263.338 kb on + strand, within SMc02908 at 263.338 kb on + strand, within SMc02908 at 263.553 kb on + strand, within SMc02908 at 263.553 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.645 kb on + strand, within SMc02908 at 263.727 kb on - strand at 264.187 kb on - strand, within SMc02909 at 264.187 kb on - strand, within SMc02909 at 264.774 kb on + strand, within SMc02909 at 264.792 kb on + strand, within SMc02909 at 265.157 kb on + strand at 265.429 kb on + strand, within SMc02910 at 265.429 kb on + strand, within SMc02910 at 265.430 kb on - strand, within SMc02910 at 265.453 kb on + strand, within SMc02910 at 265.469 kb on + strand, within SMc02910 at 265.884 kb on + strand, within SMc02910 at 265.884 kb on + strand, within SMc02910 at 265.885 kb on - strand, within SMc02910 at 265.885 kb on - strand, within SMc02910 at 266.014 kb on + strand, within SMc02910 at 266.014 kb on + strand, within SMc02910
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 262,865 + SMc02907 0.58 +2.0 262,896 + SMc02907 0.63 +0.3 262,896 + SMc02907 0.63 -1.1 262,896 + SMc02907 0.63 +0.2 262,897 - SMc02907 0.63 -0.3 263,129 - +0.4 263,338 + SMc02908 0.27 +0.3 263,338 + SMc02908 0.27 -0.6 263,553 + SMc02908 0.63 +0.3 263,553 + SMc02908 0.63 -0.7 263,645 + SMc02908 0.78 +0.6 263,645 + SMc02908 0.78 +1.8 263,645 + SMc02908 0.78 -0.9 263,645 + SMc02908 0.78 +1.4 263,727 - -0.8 264,187 - SMc02909 0.30 -2.4 264,187 - SMc02909 0.30 -2.5 264,774 + SMc02909 0.77 -3.1 264,792 + SMc02909 0.79 -1.8 265,157 + +0.3 265,429 + SMc02910 0.10 -0.6 265,429 + SMc02910 0.10 -0.1 265,430 - SMc02910 0.10 -0.1 265,453 + SMc02910 0.11 +0.0 265,469 + SMc02910 0.12 +0.7 265,884 + SMc02910 0.38 +0.7 265,884 + SMc02910 0.38 +0.7 265,885 - SMc02910 0.38 +0.4 265,885 - SMc02910 0.38 +0.1 266,014 + SMc02910 0.45 -0.0 266,014 + SMc02910 0.45 +0.1
Or see this region's nucleotide sequence