Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02867 and SMc02868 are separated by 10 nucleotides SMc02868 and SMc02869 are separated by 476 nucleotides
SMc02867: SMc02867 - multidrug-efflux system transmembrane protein, at 219,907 to 223,053
SMc02867
SMc02868: SMc02868 - multidrug efflux system protein, at 223,064 to 224,287
SMc02868
SMc02869: SMc02869 - N-Acetyl-D-glucosamine ABC transport system, ATPase component <small>(from data)</small>, at 224,764 to 225,822
SMc02869
Position (kb) 223
224
225 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 222.230 kb on + strand, within SMc02867 at 222.230 kb on + strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.231 kb on - strand, within SMc02867 at 222.881 kb on + strand at 222.881 kb on + strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.882 kb on - strand at 222.916 kb on - strand at 223.056 kb on + strand at 223.057 kb on - strand at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.309 kb on - strand, within SMc02868 at 223.404 kb on + strand, within SMc02868 at 223.405 kb on - strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.641 kb on + strand, within SMc02868 at 223.642 kb on - strand, within SMc02868 at 223.759 kb on + strand, within SMc02868 at 223.760 kb on - strand, within SMc02868 at 223.761 kb on + strand, within SMc02868 at 223.852 kb on - strand, within SMc02868 at 224.287 kb on + strand at 224.287 kb on + strand at 224.288 kb on - strand at 224.288 kb on - strand at 224.288 kb on - strand at 224.396 kb on - strand at 224.410 kb on - strand at 224.645 kb on - strand at 224.726 kb on + strand at 224.749 kb on + strand at 224.749 kb on + strand at 224.855 kb on + strand at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.912 kb on + strand, within SMc02869 at 224.913 kb on - strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.110 kb on + strand, within SMc02869 at 225.111 kb on - strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.209 kb on + strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869 at 225.210 kb on - strand, within SMc02869
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 222,230 + SMc02867 0.74 -2.4 222,230 + SMc02867 0.74 -1.2 222,231 - SMc02867 0.74 -1.5 222,231 - SMc02867 0.74 -3.0 222,231 - SMc02867 0.74 -2.8 222,881 + -1.7 222,881 + -3.1 222,882 - +0.9 222,882 - -3.0 222,882 - -3.1 222,916 - -2.7 223,056 + -1.0 223,057 - -0.3 223,309 - SMc02868 0.20 -2.3 223,309 - SMc02868 0.20 -0.9 223,309 - SMc02868 0.20 -1.5 223,404 + SMc02868 0.28 -1.4 223,405 - SMc02868 0.28 -1.1 223,641 + SMc02868 0.47 -1.4 223,641 + SMc02868 0.47 -2.2 223,642 - SMc02868 0.47 -4.0 223,759 + SMc02868 0.57 -2.7 223,760 - SMc02868 0.57 -2.5 223,761 + SMc02868 0.57 -2.6 223,852 - SMc02868 0.64 -2.3 224,287 + -4.7 224,287 + -3.0 224,288 - -1.3 224,288 - -0.9 224,288 - +1.0 224,396 - +1.0 224,410 - +0.7 224,645 - +1.0 224,726 + -0.1 224,749 + -0.2 224,749 + +0.2 224,855 + -0.1 224,912 + SMc02869 0.14 -0.3 224,912 + SMc02869 0.14 -1.0 224,912 + SMc02869 0.14 -0.0 224,912 + SMc02869 0.14 +0.6 224,912 + SMc02869 0.14 -0.0 224,913 - SMc02869 0.14 -0.0 225,110 + SMc02869 0.33 +0.9 225,110 + SMc02869 0.33 +0.7 225,111 - SMc02869 0.33 -0.2 225,209 + SMc02869 0.42 +0.5 225,209 + SMc02869 0.42 +0.1 225,209 + SMc02869 0.42 +0.6 225,210 - SMc02869 0.42 -0.0 225,210 - SMc02869 0.42 +0.6 225,210 - SMc02869 0.42 +0.7 225,210 - SMc02869 0.42 -0.1
Or see this region's nucleotide sequence