Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02640 and SMc02639 are separated by 71 nucleotides SMc02639 and SMc02638 are separated by 51 nucleotides SMc02638 and SMc02637 are separated by 9 nucleotides SMc02637 and SMc02636 are separated by 5 nucleotides
SMc02640: SMc02640 - UDP-glucuronic acid epimerase, at 1,181,090 to 1,182,115
SMc02640
SMc02639: SMc02639 - transcriptional regulator, at 1,182,187 to 1,182,519
SMc02639
SMc02638: SMc02638 - hypothetical protein, at 1,182,571 to 1,183,053
SMc02638
SMc02637: SMc02637 - hypothetical protein, at 1,183,063 to 1,183,425
SMc02637
SMc02636: SMc02636 - hypothetical protein, at 1,183,431 to 1,184,036
SMc02636
Position (kb) 1182
1183 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1181.455 kb on + strand, within SMc02640 at 1181.457 kb on + strand, within SMc02640 at 1181.490 kb on + strand, within SMc02640 at 1181.607 kb on + strand at 1181.607 kb on + strand, within SMc02640 at 1181.608 kb on - strand, within SMc02640 at 1181.608 kb on - strand, within SMc02640 at 1181.619 kb on + strand, within SMc02640 at 1181.620 kb on - strand, within SMc02640 at 1181.620 kb on - strand, within SMc02640 at 1181.620 kb on - strand, within SMc02640 at 1181.724 kb on + strand, within SMc02640 at 1182.009 kb on + strand, within SMc02640 at 1182.109 kb on - strand at 1182.109 kb on - strand at 1182.153 kb on - strand at 1182.153 kb on - strand at 1182.252 kb on - strand, within SMc02639 at 1182.550 kb on + strand at 1182.550 kb on + strand at 1182.550 kb on + strand at 1182.551 kb on - strand at 1182.551 kb on - strand at 1182.638 kb on + strand, within SMc02638 at 1182.662 kb on - strand, within SMc02638 at 1182.923 kb on - strand, within SMc02638 at 1182.923 kb on - strand, within SMc02638 at 1183.003 kb on + strand, within SMc02638 at 1183.007 kb on - strand at 1183.007 kb on - strand at 1183.007 kb on - strand at 1183.007 kb on - strand at 1183.051 kb on + strand at 1183.051 kb on + strand at 1183.052 kb on - strand at 1183.052 kb on - strand at 1183.062 kb on + strand at 1183.062 kb on + strand at 1183.063 kb on - strand at 1183.063 kb on - strand at 1183.063 kb on - strand at 1183.086 kb on + strand at 1183.087 kb on - strand at 1183.120 kb on + strand, within SMc02637 at 1183.120 kb on + strand, within SMc02637 at 1183.120 kb on + strand, within SMc02637 at 1183.120 kb on + strand, within SMc02637 at 1183.121 kb on - strand, within SMc02637 at 1183.142 kb on - strand, within SMc02637 at 1183.142 kb on - strand, within SMc02637 at 1183.142 kb on - strand, within SMc02637 at 1183.223 kb on + strand, within SMc02637 at 1183.241 kb on - strand, within SMc02637 at 1183.256 kb on + strand, within SMc02637 at 1183.424 kb on - strand at 1183.424 kb on - strand at 1183.424 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,181,455 + SMc02640 0.36 -2.3 1,181,457 + SMc02640 0.36 -3.9 1,181,490 + SMc02640 0.39 -0.6 1,181,607 + -0.3 1,181,607 + SMc02640 0.50 -3.3 1,181,608 - SMc02640 0.50 +0.1 1,181,608 - SMc02640 0.50 -2.5 1,181,619 + SMc02640 0.52 -1.6 1,181,620 - SMc02640 0.52 -0.6 1,181,620 - SMc02640 0.52 -1.8 1,181,620 - SMc02640 0.52 -3.4 1,181,724 + SMc02640 0.62 -3.7 1,182,009 + SMc02640 0.90 -4.1 1,182,109 - -3.1 1,182,109 - -0.6 1,182,153 - +0.3 1,182,153 - +0.2 1,182,252 - SMc02639 0.20 -1.3 1,182,550 + +0.2 1,182,550 + -0.5 1,182,550 + -1.0 1,182,551 - -0.9 1,182,551 - -2.4 1,182,638 + SMc02638 0.14 -0.3 1,182,662 - SMc02638 0.19 -0.1 1,182,923 - SMc02638 0.73 -0.4 1,182,923 - SMc02638 0.73 -0.4 1,183,003 + SMc02638 0.89 -0.9 1,183,007 - +0.5 1,183,007 - +0.2 1,183,007 - -0.6 1,183,007 - -1.9 1,183,051 + -0.4 1,183,051 + +0.5 1,183,052 - +0.1 1,183,052 - -0.4 1,183,062 + +0.3 1,183,062 + -0.6 1,183,063 - +0.1 1,183,063 - -0.1 1,183,063 - -0.3 1,183,086 + -0.5 1,183,087 - -0.2 1,183,120 + SMc02637 0.16 +1.1 1,183,120 + SMc02637 0.16 -0.4 1,183,120 + SMc02637 0.16 +1.2 1,183,120 + SMc02637 0.16 +0.4 1,183,121 - SMc02637 0.16 -0.1 1,183,142 - SMc02637 0.22 +1.0 1,183,142 - SMc02637 0.22 -0.4 1,183,142 - SMc02637 0.22 -1.0 1,183,223 + SMc02637 0.44 -0.6 1,183,241 - SMc02637 0.49 +1.0 1,183,256 + SMc02637 0.53 -0.3 1,183,424 - -0.1 1,183,424 - -0.8 1,183,424 - -0.3
Or see this region's nucleotide sequence