Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01904 and SMc01905 are separated by 473 nucleotides SMc01905 and SMc01906 are separated by 221 nucleotides SMc01906 and SMc01907 are separated by 230 nucleotides
SMc01904: SMc01904 - ATP-dependent protease ATP-binding subunit ClpX, at 1,363,000 to 1,364,277
SMc01904
SMc01905: SMc01905 - ATP-dependent protease LA protein, at 1,364,751 to 1,367,171
SMc01905
SMc01906: SMc01906 - histone-like protein, at 1,367,393 to 1,367,665
SMc01906
SMc01907: SMc01907 - hypothetical protein, at 1,367,896 to 1,370,085
SMc01907
Position (kb)
1364
1365
1366
1367
1368 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1364.231 kb on - strand at 1364.231 kb on - strand at 1364.236 kb on + strand at 1364.236 kb on + strand at 1364.497 kb on + strand at 1364.497 kb on + strand at 1364.498 kb on - strand at 1364.542 kb on + strand at 1364.543 kb on - strand at 1364.598 kb on + strand at 1364.598 kb on + strand at 1364.599 kb on - strand at 1367.094 kb on - strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.191 kb on + strand at 1367.192 kb on - strand at 1367.350 kb on + strand at 1367.813 kb on - strand at 1367.976 kb on - strand at 1367.976 kb on - strand at 1367.976 kb on - strand at 1368.091 kb on + strand at 1368.092 kb on - strand at 1368.092 kb on - strand at 1368.092 kb on - strand at 1368.163 kb on - strand, within SMc01907
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 1,364,231 - -0.2 1,364,231 - -2.4 1,364,236 + +0.3 1,364,236 + -0.9 1,364,497 + -0.3 1,364,497 + -1.0 1,364,498 - -0.7 1,364,542 + -0.4 1,364,543 - +1.6 1,364,598 + -0.6 1,364,598 + -0.4 1,364,599 - +0.8 1,367,094 - -1.3 1,367,191 + -0.3 1,367,191 + -0.2 1,367,191 + +0.1 1,367,191 + +0.7 1,367,192 - -1.5 1,367,350 + -1.6 1,367,813 - +2.7 1,367,976 - +2.8 1,367,976 - +3.2 1,367,976 - +2.2 1,368,091 + +3.1 1,368,092 - +2.4 1,368,092 - +2.9 1,368,092 - +3.1 1,368,163 - SMc01907 0.12 +2.8
Or see this region's nucleotide sequence