Strain Fitness in Sinorhizobium meliloti 1021 around SMc01041

Experiment: LB, pH8

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01040 and SMc01041 are separated by 76 nucleotidesSMc01041 and SMc01042 overlap by 4 nucleotides SMc01040: SMc01040 - bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, at 1,565,866 to 1,567,170 SMc01040 SMc01041: SMc01041 - NIFR3-like protein, at 1,567,247 to 1,568,275 SMc01041 SMc01042: SMc01042 - nitrogen regulation protein, at 1,568,272 to 1,569,420 SMc01042 Position (kb) 1567 1568 1569Strain fitness (log2 ratio) -2 -1 0 1at 1567.128 kb on - strandat 1567.329 kb on + strandat 1567.330 kb on - strandat 1567.568 kb on - strand, within SMc01041at 1567.617 kb on - strand, within SMc01041at 1568.060 kb on + strand, within SMc01041at 1568.206 kb on - strandat 1568.445 kb on + strand, within SMc01042at 1568.581 kb on + strand, within SMc01042at 1568.581 kb on + strand, within SMc01042at 1568.582 kb on - strand, within SMc01042at 1568.582 kb on - strand, within SMc01042at 1568.595 kb on - strand, within SMc01042at 1568.595 kb on - strand, within SMc01042at 1568.978 kb on - strand, within SMc01042

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Per-strain Table

Position Strand Gene LocusTag Fraction LB, pH8
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1,567,128 - -0.4
1,567,329 + -0.8
1,567,330 - +1.0
1,567,568 - SMc01041 0.31 +1.0
1,567,617 - SMc01041 0.36 +0.7
1,568,060 + SMc01041 0.79 +0.4
1,568,206 - +0.9
1,568,445 + SMc01042 0.15 -2.1
1,568,581 + SMc01042 0.27 -1.8
1,568,581 + SMc01042 0.27 -1.8
1,568,582 - SMc01042 0.27 +0.4
1,568,582 - SMc01042 0.27 +0.8
1,568,595 - SMc01042 0.28 -0.2
1,568,595 - SMc01042 0.28 +0.3
1,568,978 - SMc01042 0.61 -0.0

Or see this region's nucleotide sequence