Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00983 and SMc00982 are separated by 637 nucleotides SMc00982 and SMc00981 are separated by 2 nucleotides
SMc00983: SMc00983 - hypothetical protein, at 953,846 to 954,439
SMc00983
SMc00982: SMc00982 - dioxygenase, at 955,077 to 956,321
SMc00982
SMc00981: SMc00981 - ferredoxin protein, at 956,324 to 957,418
SMc00981
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 954.096 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.159 kb on + strand, within SMc00983 at 954.304 kb on - strand, within SMc00983 at 954.421 kb on - strand at 954.424 kb on - strand at 954.490 kb on + strand at 954.522 kb on - strand at 954.642 kb on - strand at 954.642 kb on - strand at 954.665 kb on + strand at 954.665 kb on + strand at 954.731 kb on - strand at 954.761 kb on + strand at 955.128 kb on + strand at 955.129 kb on - strand at 955.164 kb on + strand at 955.165 kb on - strand at 955.165 kb on - strand at 955.194 kb on + strand at 955.248 kb on + strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.411 kb on - strand, within SMc00982 at 955.680 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.715 kb on + strand, within SMc00982 at 955.887 kb on + strand, within SMc00982 at 955.888 kb on - strand, within SMc00982 at 955.889 kb on + strand, within SMc00982 at 956.103 kb on + strand, within SMc00982 at 956.214 kb on + strand at 956.534 kb on + strand, within SMc00981 at 956.534 kb on + strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.535 kb on - strand, within SMc00981 at 956.536 kb on + strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.537 kb on - strand, within SMc00981 at 956.705 kb on + strand, within SMc00981 at 957.068 kb on + strand, within SMc00981
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 954,096 + SMc00983 0.42 -1.3 954,159 + SMc00983 0.53 -0.4 954,159 + SMc00983 0.53 -0.2 954,304 - SMc00983 0.77 -0.8 954,421 - +0.0 954,424 - +0.2 954,490 + -1.1 954,522 - -0.1 954,642 - -0.3 954,642 - -0.9 954,665 + -0.3 954,665 + +0.1 954,731 - -0.1 954,761 + -0.4 955,128 + -0.8 955,129 - -0.4 955,164 + -1.0 955,165 - +0.4 955,165 - +0.7 955,194 + -0.2 955,248 + SMc00982 0.14 -1.2 955,411 - SMc00982 0.27 -0.1 955,411 - SMc00982 0.27 -1.0 955,680 + SMc00982 0.48 -0.0 955,715 + SMc00982 0.51 -0.3 955,715 + SMc00982 0.51 -0.8 955,715 + SMc00982 0.51 -0.1 955,715 + SMc00982 0.51 -1.3 955,887 + SMc00982 0.65 -1.9 955,888 - SMc00982 0.65 +0.5 955,889 + SMc00982 0.65 -1.1 956,103 + SMc00982 0.82 -1.8 956,214 + -0.5 956,534 + SMc00981 0.19 +0.3 956,534 + SMc00981 0.19 -0.1 956,535 - SMc00981 0.19 -1.6 956,535 - SMc00981 0.19 -0.3 956,535 - SMc00981 0.19 -0.2 956,536 + SMc00981 0.19 +0.2 956,537 - SMc00981 0.19 -0.4 956,537 - SMc00981 0.19 -0.8 956,537 - SMc00981 0.19 +0.1 956,705 + SMc00981 0.35 -2.8 957,068 + SMc00981 0.68 -0.5
Or see this region's nucleotide sequence