Experiment: LB, pH8
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00917 and SMc00916 are separated by 119 nucleotides SMc00916 and SMc00915 overlap by 226 nucleotides SMc00915 and SMc00914 are separated by 87 nucleotides SMc00914 and SMc00913 are separated by 500 nucleotides
SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 865,805 to 866,500
SMc00917
SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363
SMc00916
SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329
SMc00915
SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634
SMc00914
SMc00913: SMc00913 - chaperonin GroEL, at 869,135 to 870,772
SMc00913
Position (kb) 867
868
869 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 866.452 kb on + strand at 866.452 kb on + strand at 866.569 kb on + strand at 866.569 kb on + strand at 866.606 kb on + strand at 866.689 kb on + strand at 866.689 kb on + strand at 866.753 kb on - strand, within SMc00916 at 866.753 kb on - strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.957 kb on - strand, within SMc00916 at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.160 kb on - strand at 867.160 kb on - strand at 867.183 kb on + strand at 867.213 kb on + strand at 867.214 kb on - strand at 867.214 kb on - strand at 867.237 kb on + strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.239 kb on + strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.327 kb on + strand at 867.328 kb on - strand at 867.328 kb on - strand at 867.565 kb on - strand, within SMc00914 at 867.689 kb on - strand, within SMc00914 at 867.718 kb on - strand, within SMc00914 at 867.718 kb on - strand, within SMc00914 at 867.880 kb on - strand, within SMc00914 at 868.027 kb on + strand, within SMc00914 at 868.027 kb on + strand, within SMc00914 at 868.485 kb on + strand, within SMc00914 at 868.540 kb on - strand at 868.631 kb on - strand at 868.632 kb on + strand at 868.632 kb on + strand at 868.633 kb on - strand at 868.633 kb on - strand at 868.636 kb on - strand at 868.665 kb on + strand at 868.665 kb on + strand at 868.666 kb on - strand at 868.666 kb on - strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.672 kb on + strand at 868.674 kb on + strand at 868.674 kb on + strand at 868.674 kb on + strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.675 kb on - strand at 868.716 kb on - strand at 868.716 kb on - strand at 868.791 kb on + strand at 868.868 kb on - strand at 868.868 kb on - strand at 868.942 kb on - strand at 868.942 kb on - strand at 868.944 kb on - strand at 868.944 kb on - strand at 868.976 kb on + strand at 868.983 kb on + strand at 868.984 kb on - strand at 869.120 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB, pH8 remove 866,452 + -1.3 866,452 + -0.2 866,569 + -0.5 866,569 + -1.0 866,606 + +0.5 866,689 + +0.1 866,689 + +0.4 866,753 - SMc00916 0.18 +0.1 866,753 - SMc00916 0.18 -0.4 866,905 + SMc00916 0.38 -0.7 866,905 + SMc00916 0.38 +0.7 866,906 - SMc00916 0.38 +0.1 866,906 - SMc00916 0.38 +1.0 866,957 - SMc00916 0.45 -0.2 867,159 + -0.3 867,159 + -0.0 867,159 + -0.2 867,159 + -0.5 867,159 + +2.2 867,159 + -0.7 867,159 + -0.0 867,160 - +1.1 867,160 - -0.4 867,183 + -0.1 867,213 + -0.1 867,214 - -0.2 867,214 - -0.2 867,237 + +1.2 867,238 - -0.1 867,238 - +0.2 867,238 - +0.1 867,239 + -1.3 867,240 - -0.7 867,240 - +0.8 867,240 - +0.2 867,327 + -0.6 867,328 - +0.5 867,328 - +0.8 867,565 - SMc00914 0.12 -1.5 867,689 - SMc00914 0.22 -1.9 867,718 - SMc00914 0.25 -0.5 867,718 - SMc00914 0.25 -2.4 867,880 - SMc00914 0.38 -2.5 868,027 + SMc00914 0.50 -4.5 868,027 + SMc00914 0.50 -2.9 868,485 + SMc00914 0.88 -2.3 868,540 - -4.0 868,631 - -0.8 868,632 + +0.8 868,632 + -0.2 868,633 - +0.7 868,633 - -0.1 868,636 - +0.0 868,665 + -0.3 868,665 + -0.5 868,666 - -0.4 868,666 - -0.1 868,672 + +0.6 868,672 + -0.4 868,672 + +0.5 868,672 + -0.4 868,672 + +0.9 868,674 + -1.0 868,674 + +0.1 868,674 + +0.7 868,675 - +0.1 868,675 - +2.2 868,675 - +0.2 868,675 - +0.8 868,716 - +0.2 868,716 - +0.3 868,791 + -1.1 868,868 - -1.0 868,868 - -0.1 868,942 - -0.5 868,942 - +1.4 868,944 - -0.5 868,944 - +0.8 868,976 + -1.3 868,983 + +0.4 868,984 - +0.6 869,120 - +0.1
Or see this region's nucleotide sequence